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Protein structure databases

Multifaceted analysis of training and testing convolutional neural networks for protein secondary structure prediction

Maxim Shapovalov, Roland L. Dunbrack Jr., Slobodan Vucetic

BioAssemblyModeler (BAM): User-Friendly Homology Modeling of Protein Homo- and Heterooligomers

Maxim V. Shapovalov, Qiang Wang, [ ... ], Roland L. Dunbrack Jr

Structure Collisions between Interacting Proteins

Dorothea Emig, Oliver Sander, Gabriele Mayr, Mario Albrecht

To Hit or Not to Hit, That Is the Question – Genome-wide Structure-Based Druggability Predictions for Pseudomonas aeruginosa Proteins

Aurijit Sarkar, Ruth Brenk

Protein dynamics and structural waters in bromodomains

Xiaoxiao Zhang, Kai Chen, Yun-Dong Wu, Olaf Wiest

Characterization and Whole Genome Analysis of Human Papillomavirus Type 16 E1-1374^∧63nt Variants

Ivan Sabol, Mihaela Matovina, Ali Si-Mohamed, Magdalena Grce

Structural Propensities of Human Ubiquitination Sites: Accessibility, Centrality and Local Conformation

Yuan Zhou, Sixue Liu, Jiangning Song, Ziding Zhang

Common Hydrogen Bond Interactions in Diverse Phosphoryl Transfer Active Sites

Jean C. Summerton, Gregory M. Martin, Jeffrey D. Evanseck, Michael S. Chapman

Protein-Protein Interface Detection Using the Energy Centrality Relationship (ECR) Characteristic of Proteins

Sanjana Sudarshan, Sasi B. Kodathala, [ ... ], Brian W. Beck

Structural Interface Parameters Are Discriminatory in Recognising Near-Native Poses of Protein-Protein Interactions

Sony Malhotra, Kannan Sankar, Ramanathan Sowdhamini

Analysis of Conformational Variation in Macromolecular Structural Models

Sandeep Kumar Srivastava, Savitha Gayathri, Babu A. Manjasetty, Balasubramanian Gopal

Structure Based Annotation of Helicobacter pylori Strain 26695 Proteome

Swati Singh, Praveen Kumar Guttula, Lalitha Guruprasad

Viral Evolved Inhibition Mechanism of the RNA Dependent Protein Kinase PKR's Kinase Domain, a Structural Perspective

K. Hari Krishna, Yallamandayya Vadlamudi, Muthuvel Suresh Kumar

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