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Protein structure databases

Alignment of Helical Membrane Protein Sequences Using AlignMe

Marcus Stamm, René Staritzbichler, Kamil Khafizov, Lucy R. Forrest

published 04 Mar 2013

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Towards Improved Quality of GPCR Models by Usage of Multiple Templates and Profile-Profile Comparison

Dorota Latek, Pawel Pasznik, Teresa Carlomagno, Slawomir Filipek

published 28 Feb 2013

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Hierarchical Classification of Protein Folds Using a Novel Ensemble Classifier

Chen Lin, Ying Zou, Ji Qin, Xiangrong Liu, Yi Jiang, Caihuan Ke, Quan Zou

published 20 Feb 2013

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Improved Detection of Remote Homologues Using Cascade PSI-BLAST: Influence of Neighbouring Protein Families on Sequence Coverage

Swati Kaushik, Eshita Mutt, Ajithavalli Chellappan, Sandhya Sankaran, Narayanaswamy Srinivasan, Ramanathan Sowdhamini

published 20 Feb 2013

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A New Family of Intrinsically Disordered Proteins: Structural Characterization of the Major Phasin PhaF from Pseudomonas putida KT2440

Beatriz Maestro, Beatriz Galán, Carlos Alfonso, Germán Rivas, Maria A. Prieto, Jesús M. Sanz

published 15 Feb 2013

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Maximising the Size of Non-Redundant Protein Datasets Using Graph Theory

Simon C. Bull, Mark R. Muldoon, Andrew J. Doig

published 05 Feb 2013

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Prediction of Structure of Human WNT-CRD (FZD) Complex for Computational Drug Repurposing

Qurrat U. Ain, Umair Seemab, Sajid Rashid, Muhammad Sulaman Nawaz, Mohammad A. Kamal

published 25 Jan 2013

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Integron Gene Cassettes: A Repository of Novel Protein Folds with Distinct Interaction Sites

Visaahini Sureshan, Chandrika N. Deshpande, Yan Boucher, Jeremy E. Koenig, Midwest Center for Structural Genomics , H. W. Stokes, Stephen J. Harrop, Paul M. G. Curmi, Bridget C. Mabbutt

published 18 Jan 2013

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Structural and Functional Insight into ADF/Cofilin from Trypanosoma brucei

Kun Dai, Shanhui Liao, Jiahai Zhang, Xuecheng Zhang, Xiaoming Tu

published 09 Jan 2013

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A Structural-Based Strategy for Recognition of Transcription Factor Binding Sites

Beisi Xu, Dustin E. Schones, Yongmei Wang, Haojun Liang, Guohui Li

published 08 Jan 2013

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Binding Pocket Optimization by Computational Protein Design

Christoph Malisi, Marcel Schumann, Nora C. Toussaint, Jorge Kageyama, Oliver Kohlbacher, Birte Höcker

published 27 Dec 2012

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Crystal Structure and Computational Modeling of the Fab Fragment from a Protective Anti-Ricin Monoclonal Antibody

Zhiyu Zhao, David Worthylake, Louis LeCour Jr, Grace A. Maresh, Seth H. Pincus

published 19 Dec 2012

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Secondary Structure, a Missing Component of Sequence-Based Minimotif Definitions

David P. Sargeant, Michael R. Gryk, Mark W. Maciejewski, Vishal Thapar, Vamsi Kundeti, Sanguthevar Rajasekaran, Pedro Romero, Keith Dunker, Shun-Cheng Li, Tomonori Kaneko, Martin R. Schiller

published 07 Dec 2012

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