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Protein structure databases

Extending Protein Domain Boundary Predictors to Detect Discontinuous Domains

Zhidong Xue, Richard Jang, Brandon Govindarajoo, Yichu Huang, Yan Wang

published 26 Oct 2015

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Evidence-Based Structural Model of the Staphylococcal Repressor Protein: Separation of Functions into Different Domains

Kinga Nyíri, Bianka Kőhegyi, András Micsonai, József Kardos, Beata G. Vertessy

published 28 Sep 2015

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Structural and Biochemical Analysis of a Single Amino-Acid Mutant of WzzB_SF That Alters Lipopolysaccharide O-Antigen Chain Length in Shigella flexneri

Chiung-Wen Chang, Elizabeth N. H. Tran, Daniel J. Ericsson, Lachlan W. Casey, Thierry Lonhienne, Friederike Benning, Renato Morona, Bostjan Kobe

published 17 Sep 2015

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To Hit or Not to Hit, That Is the Question – Genome-wide Structure-Based Druggability Predictions for Pseudomonas aeruginosa Proteins

Aurijit Sarkar, Ruth Brenk

published 11 Sep 2015

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Designing Second Generation Anti-Alzheimer Compounds as Inhibitors of Human Acetylcholinesterase: Computational Screening of Synthetic Molecules and Dietary Phytochemicals

Hafsa Amat-ur-Rasool, Mehboob Ahmed

published 01 Sep 2015

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Citing a Data Repository: A Case Study of the Protein Data Bank

Yi-Hung Huang, Peter W. Rose, Chun-Nan Hsu

published 28 Aug 2015

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Cyanobacterial KnowledgeBase (CKB), a Compendium of Cyanobacterial Genomes and Proteomes

Arul Prakasam Peter, Karthick Lakshmanan, Shylajanaciyar Mohandass, Sangeetha Varadharaj, Sivasudha Thilagar, Kaleel Ahamed Abdul Kareem, Prabaharan Dharmar, Subramanian Gopalakrishnan, Uma Lakshmanan

published 25 Aug 2015

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Progressive Hemorrhage and Myotoxicity Induced by Echis carinatus Venom in Murine Model: Neutralization by Inhibitor Cocktail of N,N,N',N'-Tetrakis (2-Pyridylmethyl) Ethane-1,2-Diamine and Silymarin

Ankanahalli N. Nanjaraj Urs, Chandrasekaran Ramakrishnan, Vikram Joshi, Kanve Nagaraj Suvilesh, Teregowda Veerabasappa Gowda, Devadasan Velmurugan, Bannikuppe Sannanaik Vishwanath

published 14 Aug 2015

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Distance-Based Configurational Entropy of Proteins from Molecular Dynamics Simulations

Federico Fogolari, Alessandra Corazza, Sara Fortuna, Miguel Angel Soler, Bryan VanSchouwen, Giorgia Brancolini, Stefano Corni, Giuseppe Melacini, Gennaro Esposito

published 15 Jul 2015

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An Accurate Model for Biomolecular Helices and Its Application to Helix Visualization

Lincong Wang, Hui Qiao, Chen Cao, Shutan Xu, Shuxue Zou

published 30 Jun 2015

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DisoMCS: Accurately Predicting Protein Intrinsically Disordered Regions Using a Multi-Class Conservative Score Approach

Zhiheng Wang, Qianqian Yang, Tonghua Li, Peisheng Cong

published 19 Jun 2015

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Crystal Structure of Hcp from Acinetobacter baumannii: A Component of the Type VI Secretion System

Federico M. Ruiz, Elena Santillana, Mercedes Spínola-Amilibia, Eva Torreira, Esther Culebras, Antonio Romero

published 16 Jun 2015

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Structural-Functional Analysis Reveals a Specific Domain Organization in Family GH20 Hexosaminidases

Cristina Val-Cid, Xevi Biarnés, Magda Faijes, Antoni Planas

published 29 May 2015

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