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Protein structure databases

THPdb: Database of FDA-approved peptide and protein therapeutics

Salman Sadullah Usmani, Gursimran Bedi, [ ... ], Gajendra P. S. Raghava

Continuous Distributed Representation of Biological Sequences for Deep Proteomics and Genomics

Ehsaneddin Asgari, Mohammad R. K. Mofrad

Classification of Beta-Lactamases and Penicillin Binding Proteins Using Ligand-Centric Network Models

Hakime Öztürk, Elif Ozkirimli, Arzucan Özgür

DockQ: A Quality Measure for Protein-Protein Docking Models

Sankar Basu, Björn Wallner

Vinardo: A Scoring Function Based on Autodock Vina Improves Scoring, Docking, and Virtual Screening

Rodrigo Quiroga, Marcos A. Villarreal

Using AlphaFold to predict the impact of single mutations on protein stability and function

Marina A. Pak, Karina A. Markhieva, [ ... ], Dmitry N. Ivankov

Automated Builder and Database of Protein/Membrane Complexes for Molecular Dynamics Simulations

Sunhwan Jo, Taehoon Kim, Wonpil Im

Why Does the Giant Panda Eat Bamboo? A Comparative Analysis of Appetite-Reward-Related Genes among Mammals

Ke Jin, Chenyi Xue, [ ... ], Yufang Zheng

Serverification of Molecular Modeling Applications: The Rosetta Online Server That Includes Everyone (ROSIE)

Sergey Lyskov, Fang-Chieh Chou, [ ... ], Rhiju Das

RosettaRemodel: A Generalized Framework for Flexible Backbone Protein Design

Po-Ssu Huang, Yih-En Andrew Ban, [ ... ], David Baker

Drug Promiscuity in PDB: Protein Binding Site Similarity Is Key

V. Joachim Haupt, Simone Daminelli, Michael Schroeder

Molecular docking studies of 3-bromopyruvate and its derivatives to metabolic regulatory enzymes: Implication in designing of novel anticancer therapeutic strategies

Saveg Yadav, Shrish Kumar Pandey, [ ... ], Sukh Mahendra Singh

Combining Machine Learning Systems and Multiple Docking Simulation Packages to Improve Docking Prediction Reliability for Network Pharmacology

Kun-Yi Hsin, Samik Ghosh, Hiroaki Kitano

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