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Protein structure comparison

Alignment of Helical Membrane Protein Sequences Using AlignMe

Marcus Stamm, René Staritzbichler, Kamil Khafizov, Lucy R. Forrest

Towards Alignment Independent Quantitative Assessment of Homology Detection

Avihay Apatoff, Eddo Kim, Yossef Kliger

Insights from Modeling the 3D Structure of New Delhi Metallo-β-Lactamse and Its Binding Interactions with Antibiotic Drugs

Jing-Fang Wang, Kuo-Chen Chou

Protein-Protein Interaction Site Predictions with Three-Dimensional Probability Distributions of Interacting Atoms on Protein Surfaces

Ching-Tai Chen, Hung-Pin Peng, [ ... ], An-Suei Yang

Atomic Interaction Networks in the Core of Protein Domains and Their Native Folds

Venkataramanan Soundararajan, Rahul Raman, [ ... ], Ram Sasisekharan

New Binding Site Conformations of the Dengue Virus NS3 Protease Accessed by Molecular Dynamics Simulation

Hugo de Almeida, Izabela M. D. Bastos, [ ... ], Jaime M. Santana

Computational Screening and Molecular Dynamic Simulation of Breast Cancer Associated Deleterious Non-Synonymous Single Nucleotide Polymorphisms in TP53 Gene

Kumaraswamy Naidu Chitrala, Suneetha Yeguvapalli

SpyTag/SpyCatcher Cyclization Enhances the Thermostability of Firefly Luciferase

Meng Si, Qing Xu, Ling Jiang, He Huang

Assessment and Challenges of Ligand Docking into Comparative Models of G-Protein Coupled Receptors

Elizabeth Dong Nguyen, Christoffer Norn, Thomas M. Frimurer, Jens Meiler

PSPP: A Protein Structure Prediction Pipeline for Computing Clusters

Michael S. Lee, Rajkumar Bondugula, [ ... ], Jaques Reifman

DOR/Tp53inp2 and Tp53inp1 Constitute a Metazoan Gene Family Encoding Dual Regulators of Autophagy and Transcription

Ana Sancho, Jordi Duran, [ ... ], Antonio Zorzano

Structural Studies of the Tandem Tudor Domains of Fragile X Mental Retardation Related Proteins FXR1 and FXR2

Melanie A. Adams-Cioaba, Yahong Guo, [ ... ], Jinrong Min

Prodepth: Predict Residue Depth by Support Vector Regression Approach from Protein Sequences Only

Jiangning Song, Hao Tan, [ ... ], James C. Whisstock

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