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Protein structure comparison

Computational and structural based approach to identify malignant nonsynonymous single nucleotide polymorphisms associated with CDK4 gene

Rahatul Islam, Mashiur Rahaman, Hammadul Hoque, Nazmul Hasan, Shamsul H. Prodhan, Asfia Ruhama, Nurnabi Azad Jewel

published 04 Nov 2021

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Comprehensive mutagenesis to identify amino acid residues contributing to the difference in thermostability between two originally thermostable ancestral proteins

Satoshi Akanuma, Minako Yamaguchi, Akihiko Yamagishi

published 21 Oct 2021

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Predicting aptamer sequences that interact with target proteins using an aptamer-protein interaction classifier and a Monte Carlo tree search approach

Gwangho Lee, Gun Hyuk Jang, Ho Young Kang, Giltae Song

published 25 Jun 2021

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Selective transport of fluorescent proteins into the phage nucleus

Katrina T. Nguyen, Joseph Sugie, Kanika Khanna, MacKennon E. Egan, Erica A. Birkholz, Jina Lee, Christopher Beierschmitt, Elizabeth Villa, Joe Pogliano

published 10 Jun 2021

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Refining pairwise sequence alignments of membrane proteins by the incorporation of anchors

René Staritzbichler, Edoardo Sarti, Emily Yaklich, Antoniya Aleksandrova, Marcus Stamm, Kamil Khafizov, Lucy R. Forrest

published 30 Apr 2021

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Naegleria fowleri: Protein structures to facilitate drug discovery for the deadly, pathogenic free-living amoeba

Logan Tillery, Kayleigh Barrett, Jenna Goldstein, Jared W. Lassner, Bram Osterhout, Nathan L. Tran, Lily Xu, Ryan M. Young, Justin Craig, Ian Chun, David M. Dranow, Jan Abendroth, Silvia L. Delker, Douglas R. Davies, Stephen J. Mayclin, Brandy Calhoun, Madison J. Bolejack, Bart Staker, Sandhya Subramanian, Isabelle Phan, Donald D. Lorimer, Peter J. Myler, Thomas E. Edwards, Dennis E. Kyle, Christopher A. Rice, James C. Morris, James W. Leahy, Roman Manetsch, Lynn K. Barrett, Craig L. Smith, Wesley C. Van Voorhis

published 24 Mar 2021

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Alignment of virus-host protein-protein interaction networks by integer linear programming: SARS-CoV-2

Mercè Llabrés, Gabriel Valiente

published 07 Dec 2020

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Computational analysis of the metal selectivity of matrix metalloproteinase 8

Zheng Long

published 04 Dec 2020

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PolyFold: An interactive visual simulator for distance-based protein folding

Andrew J. McGehee, Sutanu Bhattacharya, Rahmatullah Roche, Debswapna Bhattacharya

published 03 Dec 2020

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The crystal structure of mouse IRG1 suggests that cis-aconitate decarboxylase has an open and closed conformation

Hye Lin Chun, So Yeon Lee, Ki-Hwa Kim, Chang Sup Lee, Tae-Jin Oh, Hyun Ho Park

published 01 Dec 2020

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Including residual contact information into replica-exchange MD simulations significantly enriches native-like conformations

Arthur Voronin, Marie Weiel, Alexander Schug

published 16 Nov 2020

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Sugarcane mosaic virus mediated changes in cytosine methylation pattern and differentially transcribed fragments in resistance-contrasting sugarcane genotypes

Marcel Fernando da Silva, Marcos Cesar Gonçalves, Michael dos Santos Brito, Cibele Nataliane Medeiros, Ricardo Harakava, Marcos Guimarães de Andrade Landell, Luciana Rossini Pinto

published 09 Nov 2020

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Rituximab-specific DNA aptamers are able to selectively recognize heat-treated antibodies

Michael Kohlberger, Sabrina Wildner, Christof Regl, Christian G. Huber, Gabriele Gadermaier

published 05 Nov 2020

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