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Protein structure comparison

Computational and structural based approach to identify malignant nonsynonymous single nucleotide polymorphisms associated with CDK4 gene

Rahatul Islam, Mashiur Rahaman, [ ... ], Nurnabi Azad Jewel

Comprehensive mutagenesis to identify amino acid residues contributing to the difference in thermostability between two originally thermostable ancestral proteins

Satoshi Akanuma, Minako Yamaguchi, Akihiko Yamagishi

Predicting aptamer sequences that interact with target proteins using an aptamer-protein interaction classifier and a Monte Carlo tree search approach

Gwangho Lee, Gun Hyuk Jang, Ho Young Kang, Giltae Song

Selective transport of fluorescent proteins into the phage nucleus

Katrina T. Nguyen, Joseph Sugie, [ ... ], Joe Pogliano

Refining pairwise sequence alignments of membrane proteins by the incorporation of anchors

René Staritzbichler, Edoardo Sarti, [ ... ], Lucy R. Forrest

Naegleria fowleri: Protein structures to facilitate drug discovery for the deadly, pathogenic free-living amoeba

Logan Tillery, Kayleigh Barrett, [ ... ], Wesley C. Van Voorhis

Alignment of virus-host protein-protein interaction networks by integer linear programming: SARS-CoV-2

Mercè Llabrés, Gabriel Valiente

Computational analysis of the metal selectivity of matrix metalloproteinase 8

Zheng Long

PolyFold: An interactive visual simulator for distance-based protein folding

Andrew J. McGehee, Sutanu Bhattacharya, Rahmatullah Roche, Debswapna Bhattacharya

The crystal structure of mouse IRG1 suggests that cis-aconitate decarboxylase has an open and closed conformation

Hye Lin Chun, So Yeon Lee, [ ... ], Hyun Ho Park

Including residual contact information into replica-exchange MD simulations significantly enriches native-like conformations

Arthur Voronin, Marie Weiel, Alexander Schug

Sugarcane mosaic virus mediated changes in cytosine methylation pattern and differentially transcribed fragments in resistance-contrasting sugarcane genotypes

Marcel Fernando da Silva, Marcos Cesar Gonçalves, [ ... ], Luciana Rossini Pinto

Rituximab-specific DNA aptamers are able to selectively recognize heat-treated antibodies

Michael Kohlberger, Sabrina Wildner, [ ... ], Gabriele Gadermaier

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