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Protein structure comparison

Molecular Analysis of Spring Viraemia of Carp Virus in China: A Fatal Aquatic Viral Disease that Might Spread in East Asian

Nian Zhi Zhang, Li Feng Zhang, Yi Nan Jiang, Ting Zhang, Chun Xia

published 22 Jul 2009

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PSPP: A Protein Structure Prediction Pipeline for Computing Clusters

Michael S. Lee, Rajkumar Bondugula, Valmik Desai, Nela Zavaljevski, In-Chul Yeh, Anders Wallqvist, Jaques Reifman

published 16 Jul 2009

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ProteinArchitect: Protein Evolution above the Sequence Level

Matthias Haimel, Karin Pröll, Michael Rebhan

published 15 Jul 2009

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Functional Equivalency Inferred from “Authoritative Sources” in Networks of Homologous Proteins

Shreedhar Natarajan, Eric Jakobsson

published 12 Jun 2009

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Structure-Based Phylogeny as a Diagnostic for Functional Characterization of Proteins with a Cupin Fold

Garima Agarwal, Malligarjunan Rajavel, Balasubramanian Gopal, Narayanaswamy Srinivasan

published 29 May 2009

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Vaccinia Virus G8R Protein: A Structural Ortholog of Proliferating Cell Nuclear Antigen (PCNA)

Melissa Da Silva, Chris Upton

published 07 May 2009

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Mutations in Specific Structural Regions of Immunoglobulin Light Chains Are Associated with Free Light Chain Levels in Patients with AL Amyloidosis

Tanya L. Poshusta, Laura A. Sikkink, Nelson Leung, Raynell J. Clark, Angela Dispenzieri, Marina Ramirez-Alvarado

published 13 Apr 2009

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An Estimate of the Numbers and Density of Low-Energy Structures (or Decoys) in the Conformational Landscape of Proteins

Kanagasabai Vadivel, Gautham Namasivayam

published 09 Apr 2009

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Length Variations amongst Protein Domain Superfamilies and Consequences on Structure and Function

Sankaran Sandhya, Saane Sudha Rani, Barah Pankaj, Madabosse Kande Govind, Bernard Offmann, Narayanaswamy Srinivasan, Ramanathan Sowdhamini

published 31 Mar 2009

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An Anomalous Type IV Secretion System in Rickettsia Is Evolutionarily Conserved

Joseph J. Gillespie, Nicole C. Ammerman, Sheila M. Dreher-Lesnick, M. Sayeedur Rahman, Micah J. Worley, Joao C. Setubal, Bruno S. Sobral, Abdu F. Azad

published 12 Mar 2009

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The Action of Key Factors in Protein Evolution at High Temporal Resolution

Armin Schmitt, Johannes Schuchhardt, Gudrun A. Brockmann

published 12 Mar 2009

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Identification of Coevolving Residues and Coevolution Potentials Emphasizing Structure, Bond Formation and Catalytic Coordination in Protein Evolution

Daniel Y. Little, Lu Chen

published 10 Mar 2009

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Recognition of Interaction Interface Residues in Low-Resolution Structures of Protein Assemblies Solely from the Positions of Cα Atoms

Rupali A. Gadkari, Deepthi Varughese, N. Srinivasan

published 13 Feb 2009

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