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Protein structure comparison

Comparative Genomics of Flowering Time Pathways Using Brachypodium distachyon as a Model for the Temperate Grasses

Janet A. Higgins, Paul C. Bailey, David A. Laurie

MUSTANG-MR Structural Sieving Server: Applications in Protein Structural Analysis and Crystallography

Arun S. Konagurthu, Cyril F. Reboul, [ ... ], Ashley M. Buckle

Arabidopsis thaliana GYRB3 Does Not Encode a DNA Gyrase Subunit

Katherine M. Evans-Roberts, Christian Breuer, [ ... ], Anthony Maxwell

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

Morgan N. Price, Paramvir S. Dehal, Adam P. Arkin

Atomic Interaction Networks in the Core of Protein Domains and Their Native Folds

Venkataramanan Soundararajan, Rahul Raman, [ ... ], Ram Sasisekharan

Armadillo Motifs Involved in Vesicular Transport

Harald Striegl, Miguel A. Andrade-Navarro, Udo Heinemann

Sequence Alignment Reveals Possible MAPK Docking Motifs on HIV Proteins

Perry Evans, Ahmet Sacan, Lyle Ungar, Aydin Tozeren

Sequence and Structural Analysis of the Chitinase Insertion Domain Reveals Two Conserved Motifs Involved in Chitin-Binding

Hai Li, Lesley H. Greene

Structural and Functional Roles of Coevolved Sites in Proteins

Saikat Chakrabarti, Anna R. Panchenko

The WD40 Domain Is Required for LRRK2 Neurotoxicity

Nathan D. Jorgensen, Yong Peng, [ ... ], William T. Dauer

Effective Identification of Conserved Pathways in Biological Networks Using Hidden Markov Models

Xiaoning Qian, Byung-Jun Yoon

A Statistical Model of Protein Sequence Similarity and Function Similarity Reveals Overly-Specific Function Predictions

Brenton Louie, Roger Higdon, Eugene Kolker

Revisiting the Myths of Protein Interior: Studying Proteins with Mass-Fractal Hydrophobicity-Fractal and Polarizability-Fractal Dimensions

Anirban Banerji, Indira Ghosh

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