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Protein structure comparison

The difficulty of aligning intrinsically disordered protein sequences as assessed by conservation and phylogeny

Andrew C. Riley, Daniel A. Ashlock, Steffen P. Graether

published 13 Jul 2023

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On closing the inopportune gap with consistency transformation and iterative refinement

Mario João Jr., Alexandre C. Sena, Vinod E. F. Rebello

published 13 Jul 2023

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An amino acid substitution in HCV core antigen limits its use as a reliable measure of HCV infection compared with HCV RNA

Payuda Hansoongnern, Pornpitra Pratedrat, Pornjarim Nilyanimit, Rujipat Wasitthankasem, Nawarat Posuwan, Nasamon Wanlapakorn, Kanchanok Kodchakorn, Prachya Kongtawelert, Napaporn Pimsing, Yong Poovorawan

published 29 Jun 2023

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Recombinant expression and preliminary characterization of Peptidyl-prolyl cis/trans-isomerase Rrd1 from Saccharomyces cerevisiae

Mohd Kashif, Ahad Amer Alsaiari, Bhupendra Kumar, Mohd Asalam, Mohammad Imran Khan, Abrar Ahmad, Rayees Ahmad Lone, Mazen Almehmadi, Mazin A. Zamzami, Mohd Sohail Akhtar

published 13 Jun 2023

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Bioinformatics characterization of BcsA-like orphan proteins suggest they form a novel family of pseudomonad cyclic-β-glucan synthases

Andrew J. Spiers, Helge C. Dorfmueller, Robyn Jerdan, Jessica McGregor, Abbie Nicoll, Kenzie Steel, Scott Cameron

published 02 Jun 2023

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Across atoms to crossing continents: Application of similarity measures to biological location data

Fabian Schuhmann, Leonie Ryvkin, James D. McLaren, Luca Gerhards, Ilia A. Solov’yov

published 15 May 2023

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Mirage2’s high-quality spliced protein-to-genome mappings produce accurate multiple-sequence alignments of isoforms

Alexander J. Nord, Travis J. Wheeler

published 08 May 2023

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The effect of the genomic GC content bias of prokaryotic organisms on the secondary structures of their proteins

Diana Barceló-Antemate, Fernando Fontove-Herrera, Walter Santos, Enrique Merino

published 04 May 2023

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B-cell epitope discovery: The first protein flexibility-based algorithm–Zika virus conserved epitope demonstration

Daniel W. Biner, Jason S. Grosch, Peter J. Ortoleva

published 15 Mar 2023

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A deep graph convolutional neural network architecture for graph classification

Yuchen Zhou, Hongtao Huo, Zhiwen Hou, Fanliang Bu

published 10 Mar 2023

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FHbp variants among meningococci of serogroup B in Italy: Evolution and selective pressure, 2014–2017

Alessandra Lo Presti, Anna Carannante, Cecilia Fazio, Arianna Neri, Paola Vacca, Luigina Ambrosio, Florigio Lista, Silvia Fillo, Paola Stefanelli

published 16 Feb 2023

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Twenty-seven ZAD-ZNF genes of Drosophila melanogaster are orthologous to the embryo polarity determining mosquito gene cucoid

Muzi Li, Koray Kasan, Zinnia Saha, Yoseop Yoon, Urs Schmidt-Ott

published 03 Jan 2023

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Candidate effector proteins from the oomycetes Plasmopara viticola and Phytophthora parasitica share similar predicted structures and induce cell death in Nicotiana species

Maud Combier, Edouard Evangelisti, Marie-Christine Piron, Sebastian Schornack, Pere Mestre

published 02 Dec 2022

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