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Protein structure comparison

Identification of Nucleotide-Binding Sites in Protein Structures: A Novel Approach Based on Nucleotide Modularity

Luca Parca, Pier Federico Gherardini, Mauro Truglio, Iolanda Mangone, Fabrizio Ferrè, Manuela Helmer-Citterich, Gabriele Ausiello

published 27 Nov 2012

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Prediction of Protein-Destabilizing Polymorphisms by Manual Curation with Protein Structure

Craig Alan Gough, Keiichi Homma, Yumi Yamaguchi-Kabata, Makoto K. Shimada, Ranajit Chakraborty, Yasuyuki Fujii, Hisakazu Iwama, Shinsei Minoshima, Shigetaka Sakamoto, Yoshiharu Sato, Yoshiyuki Suzuki, Masahito Tada-Umezaki, Ken Nishikawa, Tadashi Imanishi, Takashi Gojobori

published 26 Nov 2012

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eThread: A Highly Optimized Machine Learning-Based Approach to Meta-Threading and the Modeling of Protein Tertiary Structures

Michal Brylinski, Daswanth Lingam

published 21 Nov 2012

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BCL::Fold - De Novo Prediction of Complex and Large Protein Topologies by Assembly of Secondary Structure Elements

Mert Karakaş, Nils Woetzel, Rene Staritzbichler, Nathan Alexander, Brian E. Weiner, Jens Meiler

published 16 Nov 2012

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Predicting Turns in Proteins with a Unified Model

Qi Song, Tonghua Li, Peisheng Cong, Jiangming Sun, Dapeng Li, Shengnan Tang

published 07 Nov 2012

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Protein Fragments: Functional and Structural Roles of Their Coevolution Networks

Linda Dib, Alessandra Carbone

published 05 Nov 2012

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The Single T65S Mutation Generates Brighter Cyan Fluorescent Proteins with Increased Photostability and pH Insensitivity

Asma Fredj, Hélène Pasquier, Isabelle Demachy, Gabriella Jonasson, Bernard Levy, Valérie Derrien, Yasmina Bousmah, Gallia Manoussaris, Frank Wien, Jacqueline Ridard, Marie Erard, Fabienne Merola

published 02 Nov 2012

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Sequence Evolution of the Intrinsically Disordered and Globular Domains of a Model Viral Oncoprotein

Lucía B. Chemes, Juliana Glavina, Leonardo G. Alonso, Cristina Marino-Buslje, Gonzalo de Prat-Gay, Ignacio E. Sánchez

published 31 Oct 2012

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Protein Dynamics Governed by Interfaces of High Polarity and Low Packing Density

Vladimir Espinosa Angarica, Javier Sancho

published 26 Oct 2012

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Accurate Prediction of Protein Catalytic Residues by Side Chain Orientation and Residue Contact Density

Yu-Tung Chien, Shao-Wei Huang

published 24 Oct 2012

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How Metal Substitution Affects the Enzymatic Activity of Catechol-O-Methyltransferase

Manuel Sparta, Anastassia N. Alexandrova

published 08 Oct 2012

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Predicting the Functional Effect of Amino Acid Substitutions and Indels

Yongwook Choi, Gregory E. Sims, Sean Murphy, Jason R. Miller, Agnes P. Chan

published 08 Oct 2012

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Raman Spectroscopy Adds Complementary Detail to the High-Resolution X-Ray Crystal Structure of Photosynthetic PsbP from Spinacia oleracea

Vladimir Kopecky Jr, Jaroslava Kohoutova, Mikalai Lapkouski, Katerina Hofbauerova, Zofie Sovova, Olga Ettrichova, Sergio González-Pérez, Alexander Dulebo, David Kaftan, Ivana Kuta Smatanova, Jose L. Revuelta, Juan B. Arellano, Jannette Carey, Rüdiger Ettrich

published 05 Oct 2012

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