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Protein structure comparison

Towards Improved Quality of GPCR Models by Usage of Multiple Templates and Profile-Profile Comparison

Dorota Latek, Pawel Pasznik, Teresa Carlomagno, Slawomir Filipek

published 28 Feb 2013

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Behavior of Solvent-Exposed Hydrophobic Groove in the Anti-Apoptotic Bcl-X_L Protein: Clues for Its Ability to Bind Diverse BH3 Ligands from MD Simulations

Dilraj Lama, Vivek Modi, Ramasubbu Sankararamakrishnan

published 28 Feb 2013

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In-Silico Structural and Functional Characterization of a V. cholerae O395 Hypothetical Protein Containing a PDZ1 and an Uncommon Protease Domain

Avirup Dutta, Atul Katarkar, Keya Chaudhuri

published 18 Feb 2013

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Searching Remote Homology with Spectral Clustering with Symmetry in Neighborhood Cluster Kernels

Ujjwal Maulik, Anasua Sarkar

published 15 Feb 2013

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Allosteric Regulation of Serine Protease HtrA2 through Novel Non-Canonical Substrate Binding Pocket

Pruthvi Raj Bejugam, Raja R. Kuppili, Nitu Singh, Nikhil Gadewal, Lalith K. Chaganti, G. Madhavi Sastry, Kakoli Bose

published 14 Feb 2013

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Increasing Sequence Search Sensitivity with Transitive Alignments

Ketil Malde, Tomasz Furmanek

published 14 Feb 2013

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Local Conformational Changes in the DNA Interfaces of Proteins

Tomoko Sunami, Hidetoshi Kono

published 13 Feb 2013

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Crystallographic Observation of pH-Induced Conformational Changes in the Amyelois transitella Pheromone-Binding Protein AtraPBP1

Eric di Luccio, Yuko Ishida, Walter S. Leal, David K. Wilson

published 13 Feb 2013

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Dramatic Structural Changes Resulting from the Loss of a Crucial Hydrogen Bond in the Hinge Region Involved in C-Terminal Helix Swapping in SurE: A Survival Protein from Salmonella typhimurium

Yamuna Kalyani Mathiharan, Anju Pappachan, H. S. Savithri, Mathur R. N. Murthy

published 07 Feb 2013

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Maximising the Size of Non-Redundant Protein Datasets Using Graph Theory

Simon C. Bull, Mark R. Muldoon, Andrew J. Doig

published 05 Feb 2013

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Stimulation of Inositol 1,4,5-Trisphosphate (IP₃) Receptor Subtypes by Analogues of IP₃

Huma Saleem, Stephen C. Tovey, Taufiq Rahman, Andrew M. Riley, Barry V. L. Potter, Colin W. Taylor

published 25 Jan 2013

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Prediction of Structure of Human WNT-CRD (FZD) Complex for Computational Drug Repurposing

Qurrat U. Ain, Umair Seemab, Sajid Rashid, Muhammad Sulaman Nawaz, Mohammad A. Kamal

published 25 Jan 2013

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Polymer Uncrossing and Knotting in Protein Folding, and Their Role in Minimal Folding Pathways

Ali R. Mohazab, Steven S. Plotkin

published 24 Jan 2013

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