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Protein structure comparison

Multiple Amino Acid Sequence Alignment Nitrogenase Component 1: Insights into Phylogenetics and Structure-Function Relationships

James B. Howard, Katerina J. Kechris, Douglas C. Rees, Alexander N. Glazer

published 03 Sep 2013

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Replica Exchange Improves Sampling in Low-Resolution Docking Stage of RosettaDock

Zhe Zhang, Oliver F. Lange

published 29 Aug 2013

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In-Cell NMR Characterization of the Secondary Structure Populations of a Disordered Conformation of α-Synuclein within E. coli Cells

Christopher A. Waudby, Carlo Camilloni, Anthony W. P. Fitzpatrick, Lisa D. Cabrita, Christopher M. Dobson, Michele Vendruscolo, John Christodoulou

published 26 Aug 2013

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New Binding Site Conformations of the Dengue Virus NS3 Protease Accessed by Molecular Dynamics Simulation

Hugo de Almeida, Izabela M. D. Bastos, Bergmann M. Ribeiro, Bernard Maigret, Jaime M. Santana

published 21 Aug 2013

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Octarellin VI: Using Rosetta to Design a Putative Artificial (β/α)₈ Protein

Maximiliano Figueroa, Nicolas Oliveira, Annabelle Lejeune, Kristian W. Kaufmann, Brent M. Dorr, André Matagne, Joseph A. Martial, Jens Meiler, Cécile Van de Weerdt

published 19 Aug 2013

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Beyond Reasonable Doubt: Evolution from DNA Sequences

W. Timothy J. White, Bojian Zhong, David Penny

published 08 Aug 2013

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Homology Modeling of the CheW Coupling Protein of the Chemotaxis Signaling Complex

Derek J. Cashman, Davi R. Ortega, Igor B. Zhulin, Jerome Baudry

published 07 Aug 2013

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DING Proteins from Phylogenetically Different Species Share High Degrees of Sequence and Structure Homology and Block Transcription of HIV-1 LTR Promoter

Rakhee Sachdeva, Nune Darbinian, Kamel Khalili, Shohreh Amini, Daniel Gonzalez, Ahmed Djeghader, Eric Chabriére, Andrew Suh, Ken Scott, Malgorzata Simm

published 06 Aug 2013

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A Comparison of Structural and Evolutionary Attributes of Escherichia coli and Thermus thermophilus Small Ribosomal Subunits: Signatures of Thermal Adaptation

Saurav Mallik, Sudip Kundu

published 05 Aug 2013

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The Hymenopteran Tree of Life: Evidence from Protein-Coding Genes and Objectively Aligned Ribosomal Data

Seraina Klopfstein, Lars Vilhelmsen, John M. Heraty, Michael Sharkey, Fredrik Ronquist

published 02 Aug 2013

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Sequence Analysis of the Genome of Piscine Orthoreovirus (PRV) Associated with Heart and Skeletal Muscle Inflammation (HSMI) in Atlantic Salmon (Salmo salar)

Turhan Markussen, Maria K. Dahle, Torstein Tengs, Marie Løvoll, Øystein W. Finstad, Christer R. Wiik-Nielsen, Søren Grove, Silje Lauksund, Børre Robertsen, Espen Rimstad

published 29 Jul 2013

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Efficient Sampling in Fragment-Based Protein Structure Prediction Using an Estimation of Distribution Algorithm

David Simoncini, Kam Y. J. Zhang

published 25 Jul 2013

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Structure of the SCAN Domain of Human Paternally Expressed Gene 3 Protein

Vadim Rimsa, Thomas C. Eadsforth, William N. Hunter

published 23 Jul 2013

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