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Protein structure comparison

Heterologous expression, purification, and biochemical characterization of protease 3075 from Cohnella sp. A01

Fatemeh Hashemi Shahraki, Narges Evazzadeh, Saeed Aminzadeh

published 16 Dec 2024

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Systematic analysis of the relationship between fold-dependent flexibility and artificial intelligence protein structure prediction

Neshatul Haque, Jessica B. Wagenknecht, Brian D. Ratnasinghe, Michael T. Zimmermann

published 26 Nov 2024

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Identification of interaction partners of outer inflammatory protein A: Computational and experimental insights into how Helicobacter pylori infects host cells

Sümeyye Akcelik-Deveci, Elif Kılıç, Nesteren Mansur-Ozen, Emel Timucin, Yaren Buyukcolak, Sinem Oktem-Okullu

published 29 Oct 2024

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Demonstration of physicochemical and functional similarity between Stimufend (pegfilgrastim-fpgk) and Neulasta (pegfilgrastim): A comparative analytical assessment

Alison Sykes, Louise Ingram, Ulrich Kronthaler, Laurent Chevalet

published 24 Oct 2024

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An application of node and edge nonlinear hypergraph centrality to a protein complex hypernetwork

Sarah Lawson, Diane Donovan, James Lefevre

published 03 Oct 2024

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Production and characterization of homologous protoporphyrinogen IX oxidase (PPO) proteins: Evidence that small N-terminal amino acid changes do not impact protein function

Cunxi Wang, Meiying Zheng, Chandler Est, Remi Lawal, Wenguang Liang, David A. Korasick, Michael J. Rau, Scott A. Saracco, Virginia Johnson, Yanfei Wang, Tommi White, Wenze Li, Jun Zhang, Xin Gu, Flora Liu-Gontarek

published 26 Sep 2024

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Identification of critical amino acids in the DNA binding domain of LuxO: Lessons from a constitutive active LuxO

Shradha Surin, Richa Singh, Manpreet Kaur, Gourab Basu Choudhury, Himanshu Sen, Chetna Dureja, Saumen Datta, Saumya Raychaudhuri

published 17 Sep 2024

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Unlocking epitope similarity: A comparative analysis of the American manatee (Trichechus manatus) IgA and human IgA through an immuno-informatics approach

Mariapaula Díaz-Yayguaje, Susana Caballero-Gaitan, Augusto Valderrama-Aguirre

published 16 Sep 2024

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AmiR-P³: An AI-based microRNA prediction pipeline in plants

Sobhan Ataei, Jafar Ahmadi, Sayed-Amir Marashi, Ilia Abolhasani

published 01 Aug 2024

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In vitro synthesis and biochemical characterization of acyl-homoserine lactone synthase and its deletion mutant

Yechan Jeong, Sunwoo Moon, Jae-hwa Shin

published 31 May 2024

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GTExome: Modeling commonly expressed missense mutations in the human genome

Jill Hoffman, Henry Tan, Clara Sandoval-Cooper, Kaelyn de Villiers, Scott M. Reed

published 30 May 2024

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The molecular interaction of six single-stranded DNA aptamers to cardiac troponin I revealed by docking and molecular dynamics simulation

Bejo Ropii, Maulidwina Bethasari, Isa Anshori, Allya Paramita Koesoema, Wervyan Shalannanda, Ardianto Satriawan, Casi Setianingsih, Mohammad Rizki Akbar, Reza Aditama, Fahmi Fahmi, Erwin Sutanto, Muhammad Yazid, Muhammad Aziz

published 15 May 2024

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AlphaFold2 modeling and molecular dynamics simulations of an intrinsically disordered protein

Hao-Bo Guo, Baxter Huntington, Alexander Perminov, Kenya Smith, Nicholas Hastings, Patrick Dennis, Nancy Kelley-Loughnane, Rajiv Berry

published 13 May 2024

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