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Protein interaction networks

ProtAttn-QuadNet: An attention-based deep learning framework for protein–protein interaction prediction using ProtBERT embeddings

Md. Shahidul Islam, Md. Muhtasim Rahman Mim, Md. Raihan Kabir

published 02 Jun 2026

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Integrative transcriptomic analysis identifies immune-associated candidate genes and altered immune cell infiltration in pulmonary arterial hypertension

Xitong Yang, Bin Zhou, Ying Yang, Yu Dong, Jifen Fu, Hong Liu, Xinhua Wu

published 22 May 2026

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Computational biology exposed a common pathogenic mechanism in influenza A and Guillain-Barré syndrome

Ye Deng, Zhongwen Tang, Qiong Chen, Xujuan Hu, Yingjie Zhang, Meng Chen, Qiongya Wang, Fuli Ren

published 20 May 2026

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Heterogeneous biological graph convolutional network for drug-target interaction prediction

Haoran Zhu, Jianjia Wang, Zhen Hua, Chaoqun Wang, Zimu Zhang, Tong Yu, Ling Ge

published 19 May 2026

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Network toxicology and bioinformatics analysis predict potential molecular targets and mechanisms by which sevoflurane and propofol influence type 2 diabetes mellitus

Lili Bai, Ping Li, Lina Zhao

published 18 May 2026

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Node properties of biomarkers within the protein–protein interaction network derived from breast cancer-associated genes

Takanori Sasaki, Saito Torii

published 06 May 2026

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A network-centric approach reveals novel pathways impacted by Prader-Willi Syndrome

Kunal Bham, Manju Anandakrishnan, Cathy H. Wu, Karen E. Ross

published 28 Apr 2026

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Exploring proteomic signatures in sepsis and non-infectious systemic inflammatory response syndrome

Adolfo Ruiz-Sanmartín, Vicent Ribas, David Suñol, Luis Chiscano-Camón, Laura Martín, Iván Bajaña, Juliana Bastida, Nieves Larrosa, Juan José González, María Dolores Carrasco, Núria Canela, Ricard Ferrer, Juan Carlos Ruiz-Rodríguez

published 24 Apr 2026

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Network pharmacological insight into traditional bone healing practices of Sikkim, India

Mukunda Anuj Sharma, Bharat Gopalrao Somkuwar, Parvin A. Barbhuiya, Bhumika Gurung, Madhusmita Mahapatra, Firdous Fatima, Teresa Ningthoujam, Ashika Bhattarai, Bikash Rai, Pravin Kumar, Bishal Tiwari, Sancha Kumar Subba, Zyankit Lepcha, Purna Maya Gurung, Nandalal Khadka, Ratan Bahadur Tamang, Balbir Khati, Shribhakta Chettri, Ran Bahadur Rai, Hem Lall Sharma, Yam Bahadur Rai, Norzang Lepcha, Theptuk Lepcha, Pritiman Singh Chettri, Monraj Limboo, Theweng Gyenthen, Tulshi Pradhan, Prem Gurung, Prem Prashad Dhakal, Nanaocha Sharma, Lokesh Deb

published 15 Apr 2026

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Anti-hepatocellular carcinoma activity of Jacaranda mimosifolia through experimental validation and network pharmacology

Ayesha Bibi, Muhammad Hamza Afandi, Azra Mehmood, Usman Ali Ashfaq, Muhammad Shareef Masoud, Mohsin Ahmad Khan, Rashid Bhatti

published 03 Apr 2026

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Proteome-based investigation of O-GlcNAcylation in a C. elegans model of ageing and Alzheimer’s disease: Functional support for earlier hypothesis-generating findings

Fernando Garcia Olivera

published 30 Mar 2026

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Integrated network pharmacology and comprehensive bioinformatics analysis to identify the mechanisms and molecular targets of ketamine in ischemic stroke–depression comorbidity

Yunfei Shu, Yinhao Guo, Suihan Xu, Hongxia He, Biao Zeng, Zhenyu Yang, Wei Gao, Jun Li

published 18 Mar 2026

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Identification of novel plasma proteomic biomarkers of Dupuytren disease

Blake Hummer, Paola Sebastiani, Anastasia Leshchyk, Anastasia Gurinovich, Cecilie Bager, Morten Karsdal, Signe Nielsen, Charles Eaton

published 18 Mar 2026

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