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Protein interaction networks

ProtAttn-QuadNet: An attention-based deep learning framework for protein–protein interaction prediction using ProtBERT embeddings

Md. Shahidul Islam, Md. Muhtasim Rahman Mim, Md. Raihan Kabir

Integrative transcriptomic analysis identifies immune-associated candidate genes and altered immune cell infiltration in pulmonary arterial hypertension

Xitong Yang, Bin Zhou, [ ... ], Xinhua Wu

Computational biology exposed a common pathogenic mechanism in influenza A and Guillain-Barré syndrome

Ye Deng, Zhongwen Tang, [ ... ], Fuli Ren

Heterogeneous biological graph convolutional network for drug-target interaction prediction

Haoran Zhu, Jianjia Wang, [ ... ], Ling Ge

Network toxicology and bioinformatics analysis predict potential molecular targets and mechanisms by which sevoflurane and propofol influence type 2 diabetes mellitus

Lili Bai, Ping Li, Lina Zhao

Node properties of biomarkers within the protein–protein interaction network derived from breast cancer-associated genes

Takanori Sasaki, Saito Torii

A network-centric approach reveals novel pathways impacted by Prader-Willi Syndrome

Kunal Bham, Manju Anandakrishnan, Cathy H. Wu, Karen E. Ross

Exploring proteomic signatures in sepsis and non-infectious systemic inflammatory response syndrome

Adolfo Ruiz-Sanmartín, Vicent Ribas, [ ... ], Juan Carlos Ruiz-Rodríguez

Network pharmacological insight into traditional bone healing practices of Sikkim, India

Mukunda Anuj Sharma, Bharat Gopalrao Somkuwar, [ ... ], Lokesh Deb

Anti-hepatocellular carcinoma activity of Jacaranda mimosifolia through experimental validation and network pharmacology

Ayesha Bibi, Muhammad Hamza Afandi, [ ... ], Rashid Bhatti

Proteome-based investigation of O-GlcNAcylation in a C. elegans model of ageing and Alzheimer’s disease: Functional support for earlier hypothesis-generating findings

Fernando Garcia Olivera

Integrated network pharmacology and comprehensive bioinformatics analysis to identify the mechanisms and molecular targets of ketamine in ischemic stroke–depression comorbidity

Yunfei Shu, Yinhao Guo, [ ... ], Jun Li

Identification of novel plasma proteomic biomarkers of Dupuytren disease

Blake Hummer, Paola Sebastiani, [ ... ], Charles Eaton

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