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Nucleotide mapping

Deep learning framework for RNA 5hmC prediction using RNA language model embeddings

Md Muhaiminul Islam Nafi

published 03 Feb 2026

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Biophysical and biochemical evidence for the role of acetate kinases (AckAs) in an acetogenic pathway in pathogenic spirochetes

Ranjit K. Deka, Shih-Chia Tso, Wei Z. Liu, Chad A. Brautigam

published 09 Jan 2025

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Mitochondrial phylogeny and distribution of cytoplasmic male sterility-associated genes in Beta vulgaris

Keishi Kubota, Mion Oishi, Eigo Taniguchi, Akiho Akazawa, Katsunori Matsui, Kazuyoshi Kitazaki, Atsushi Toyoda, Hidehiro Toh, Hiroaki Matsuhira, Yosuke Kuroda, Tomohiko Kubo

published 27 Sep 2024

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Mottle: Accurate pairwise substitution distance at high divergence through the exploitation of short-read mappers and gradient descent

Alisa Prusokiene, Neil Boonham, Adrian Fox, Thomas P. Howard

published 21 Mar 2024

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Authentication of Allium ulleungense, A. microdictyon and A. ochotense based on super-barcoding of plastid genome and 45S nrDNA

Minyoung Lee, Hyo Young Lee, Jong-Soo Kang, Hyeji Lee, Ki-Jin Park, Jee Young Park, Tae-Jin Yang

published 20 Nov 2023

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Temporal convolutional network for a Fast DNA mutation detection in breast cancer data

Untari Novia Wisesty, Tati Rajab Mengko, Ayu Purwarianti, Adi Pancoro

published 25 May 2023

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Impact of the yeast S0/uS2-cluster ribosomal protein rpS21/eS21 on rRNA folding and the architecture of small ribosomal subunit precursors

Gisela Pöll, Joachim Griesenbeck, Herbert Tschochner, Philipp Milkereit

published 30 Mar 2023

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FHbp variants among meningococci of serogroup B in Italy: Evolution and selective pressure, 2014–2017

Alessandra Lo Presti, Anna Carannante, Cecilia Fazio, Arianna Neri, Paola Vacca, Luigina Ambrosio, Florigio Lista, Silvia Fillo, Paola Stefanelli

published 16 Feb 2023

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GenomeBits insight into omicron and delta variants of coronavirus pathogen

Enrique Canessa, Livio Tenze

published 11 Jul 2022

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Crystal structure of an RNA/DNA strand exchange junction

Joshua C. Cofsky, Gavin J. Knott, Christine L. Gee, Jennifer A. Doudna

published 18 Apr 2022

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mRNA codon optimization with quantum computers

Dillion M. Fox, Kim M. Branson, Ross C. Walker

published 29 Oct 2021

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U2 snRNA structure is influenced by SF3A and SF3B proteins but not by SF3B inhibitors

Veronica K. Urabe, Meredith Stevers, Arun K. Ghosh, Melissa S. Jurica

published 14 Oct 2021

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Could LASCA-imaging of GB-speckles be applied for a high discrimination and typing of pathogenic bacteria?

Onega Ulianova, Sergey Ulyanov, Sergey Zaytsev, Yuriy Saltykov, Alexander Ulyanov, Valentina Feodorova

published 28 Jan 2021

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