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Microbiome

Mycobacterium avium subsp. paratuberculosis and microbiome profile of patients in a referral gastrointestinal diseases centre in the Sudan

Wisal A. Elmagzoub, Sanaa M. Idris, Maha Isameldin, Nassir Arabi, Abdelmonem Abdo, Mustafa Ibrahim, Md Anik Ashfaq Khan, Franziska Tanneberger, Sahar M. Bakhiet, Julius B. Okuni, Lonzy Ojok, Ahmed A. Gameel, Ahmed Abd El Wahed, Michaël Bekaert, Mohamed E. Mukhtar, Ahmad Amanzada, Kamal H. Eltom, ElSagad Eltayeb

published 05 Apr 2022

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An optimized approach for processing of frozen lung and lavage samples for microbiome studies

Rosana Wiscovitch-Russo, Harinder Singh, Lauren M. Oldfield, Alexey V. Fedulov, Norberto Gonzalez-Juarbe

published 05 Apr 2022

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Jejunoileal mucosal growth in mice with a limited microbiome

Matthew P. Shaughnessy, Christine J. Park, Pooja S. Salvi, Robert A. Cowles

published 29 Mar 2022

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An atlas of robust microbiome associations with phenotypic traits based on large-scale cohorts from two continents

Daphna Rothschild, Sigal Leviatan, Ariel Hanemann, Yossi Cohen, Omer Weissbrod, Eran Segal

published 24 Mar 2022

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Diversity and distribution of sediment bacteria across an ecological and trophic gradient

Hailey M. Sauer, Trinity L. Hamilton, Rika E. Anderson, Charles E. Umbanhowar Jr., Adam J. Heathcote

published 21 Mar 2022

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Alternative to ZnO to establish balanced intestinal microbiota for weaning piglets

Ákos Juhász, Viviána Molnár-Nagy, Zsófia Bata, Ko-Hua Tso, Zoltán Mayer, Katalin Posta

published 17 Mar 2022

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Formalin-Fixed Paraffin-Embedded (FFPE) samples are not a beneficial replacement for frozen tissues in fetal membrane microbiota research

Rochelle Hockney, Caroline H. Orr, Gareth J. Waring, Inge Christiaens, Gillian Taylor, Stephen P. Cummings, Stephen C. Robson, Andrew Nelson

published 17 Mar 2022

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How to prepare stool banks for an appropriate response to the ongoing COVID-19 pandemic: Experiences in the Netherlands and a retrospective comparative cohort study for faecal microbiota transplantation

Bas Groenewegen, Emilie van Lingen, Rogier E. Ooijevaar, Els Wessels, Mariet C. W. Feltkamp, Eline Boeije-Koppenol, Hein W. Verspaget, Ed J. Kuijper, Joffrey van Prehn, Josbert J. Keller, Elisabeth M. Terveer, on behalf of the Study Group of the Netherlands Donor Feces Bank

published 17 Mar 2022

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Antibiotics cause metabolic changes in mice primarily through microbiome modulation rather than behavioral changes

Kale S. Bongers, Roderick A. McDonald, Katherine M. Winner, Nicole R. Falkowski, Christopher A. Brown, Jennifer M. Baker, Kevin J. Hinkle, Daniel J. Fergle, Robert P. Dickson

published 17 Mar 2022

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Differences in the gut microbiome composition of Korean children and adult samples based on different DNA isolation kits

Changyoon Baek, Woo Jin Kim, JaeWoo Moon, Seo Yoon Moon, Wonsub Kim, Hae-Jin Hu, Junhong Min

published 10 Mar 2022

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High cellulose dietary intake relieves asthma inflammation through the intestinal microbiome in a mouse model

Song Wen, Guifang Yuan, Cunya Li, Yang Xiong, Xuemei Zhong, Xiaoyu Li

published 10 Mar 2022

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Gut microbiome modifications over time when removing in-feed antibiotics from the prophylaxis of post-weaning diarrhea in piglets

Paola Cremonesi, Filippo Biscarini, Bianca Castiglioni, Carlo Angelo Sgoifo, Riccardo Compiani, Paolo Moroni

published 07 Mar 2022

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Ranking the biases: The choice of OTUs vs. ASVs in 16S rRNA amplicon data analysis has stronger effects on diversity measures than rarefaction and OTU identity threshold

Marlène Chiarello, Mark McCauley, Sébastien Villéger, Colin R. Jackson

published 24 Feb 2022

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