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Microbial genomics

When Whole-Genome Alignments Just Won't Work: kSNP v2 Software for Alignment-Free SNP Discovery and Phylogenetics of Hundreds of Microbial Genomes

Shea N. Gardner, Barry G. Hall

One Bacterial Cell, One Complete Genome

Tanja Woyke, Damon Tighe, [ ... ], Jan-Fang Cheng

Comparing Apples and Oranges?: Next Generation Sequencing and Its Impact on Microbiome Analysis

Adam G. Clooney, Fiona Fouhy, [ ... ], Marcus J. Claesson

The Sorcerer II Global Ocean Sampling Expedition: Metagenomic Characterization of Viruses within Aquatic Microbial Samples

Shannon J. Williamson, Douglas B. Rusch, [ ... ], J. Craig Venter

Metagenomics of the Deep Mediterranean, a Warm Bathypelagic Habitat

Ana-Belen Martín-Cuadrado, Purificación López-García, [ ... ], Francisco Rodríguez-Valera

Insights from Characterizing Extinct Human Gut Microbiomes

Raul Y. Tito, Dan Knights, [ ... ], Cecil M. Lewis Jr

Metagenomic Analysis of Respiratory Tract DNA Viral Communities in Cystic Fibrosis and Non-Cystic Fibrosis Individuals

Dana Willner, Mike Furlan, [ ... ], Forest Rohwer

The human microbiome and COVID-19: A systematic review

Shinya Yamamoto, Makoto Saito, [ ... ], Hiroshi Yotsuyanagi

Bacterial Communities in Semen from Men of Infertile Couples: Metagenomic Sequencing Reveals Relationships of Seminal Microbiota to Semen Quality

Shun-Long Weng, Chih-Min Chiu, [ ... ], Hsien-Da Huang

Optimizing Taq Polymerase Concentration for Improved Signal-to-Noise in the Broad Range Detection of Low Abundance Bacteria

Rudolph Spangler, Noel L. Goddard, David S. Thaler

Potential Role of the Bovine Rumen Microbiome in Modulating Milk Composition and Feed Efficiency

Elie Jami, Bryan A. White, Itzhak Mizrahi

Pebble and Rock Band: Heuristic Resolution of Repeats and Scaffolding in the Velvet Short-Read de Novo Assembler

Daniel R. Zerbino, Gayle K. McEwen, Elliott H. Margulies, Ewan Birney

Disruption of the Human Gut Microbiota following Norovirus Infection

Adam M. Nelson, Seth T. Walk, [ ... ], Vincent B. Young

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