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Microbial genomics

Isolation and characterization of four novel Vibrio parahaemolyticus bacteriophages from oysters

Joud Aldaroub, Chrissy M. Walsky, Rylee E. Ewell, Frank O. Aylward, Ann M. Stevens, Alison Kernell Burke

published 29 Dec 2025

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Centriflaken: An automated data analysis pipeline for assembly and in silico analyses of foodborne pathogens from metagenomic samples

Kranti Konganti, Julie A. Kase, Narjol Gonzalez-Escalona

published 23 Dec 2025

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The relationships between box turtle gut microbiomes and personality

Kaija Harlow, Elizabeth K. Service, Jace E. Geiger, Bradley E. Carlson, Steven J.A. Kimble

published 19 Dec 2025

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Development of a competition assay to assess the in vitro fitness of dengue virus serotypes using an optimized serotype-specific qRT-PCR

Anne-Fleur Griffon, Loeïza Rault, Clément Tanvet, Etienne Simon-Lorière, Myrielle Dupont-Rouzeyrol, Catherine Inizan

published 15 Dec 2025

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Whole-genome analysis of Lysinibacillus boronitolerans MSR1: A dairy-isolated multidrug-resistant and non-pathogenic strain

Md. Shahedur Rahman, Md. Tofidul Islam, Mahadi Hasan, Md. Tariquzzaman, Nure Sharaf Nower Samia, Md. Mahfuzur Rahman, Mustafizur Rahman

published 12 Dec 2025

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Epigenome analysis of an algae-infecting giant virus reveals a unique methylation motif catalogue

Alexander R. Truchon, Erik R. Zinser, Steven W. Wilhelm

published 12 Dec 2025

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Effects of risperidone on amino acid metabolism, glucose, and kidney function in healthy adults: A pilot randomized controlled trial

Megumi Oshima, Tadashi Toyama, Yusuke Nakade, Sakae Miyagi, Hisayuki Ogura, Shiori Nakagawa, Takahiro Yuasa, Akihiko Koshino, Keisuke Horikoshi, Taichiro Minami, Keisuke Sako, Shunsuke Tsuge, Akira Tamai, Ryo Nishioka, Taro Miyagawa, Kiyoaki Ito, Shinji Kitajima, Ichiro Mizushima, Akinori Hara, Norihiko Sakai, Miho Shimizu, Toshiaki Tokumaru, Makoto Tsubomoto, Mitsuru Kikuchi, Masashi Kinoshita, Mitsutoshi Nakada, Masashi Mita, Yasunori Iwata, Takashi Wada

published 05 Dec 2025

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SARS-CoV-2 detection is independent of microbiome composition on surfaces in a major Ontario hospital

Nikhil A. George, Lauren Bradford, Aaron Hinz, Marita El Kadi, Lydia Xing, Evgueni Doukhanine, Derek R. MacFadden, Caroline Nott, Michael Fralick, Rees Kassen, Alex Wong, Laura A. Hug

published 04 Dec 2025

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A reliable in vitro rumen culture system and workflow for screening anti-methanogenic compounds

Philip P. Laric, Armina Mortazavi, Ewa Węgrzyn, Kathrin Simon, Pauline S. Rittel, Florian M. Trefz, Benedikt Sabass

published 01 Dec 2025

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DOGMA: de novo assembly of densely labelled optical DNA maps using a matrix profile approach

Albertas Dvirnas, Luis Mario Leal-Garza, Zahra Abbaspour, Erik Fröbrant, Karolin Frykholm, Marie Wrande, Linus Sandegren, Fredrik Westerlund, Tobias Ambjörnsson

published 01 Dec 2025

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Neural and endothelial cell-derived extracellular vesicles mediate Zika virus genome dissemination and productive infection in vivo

María-Angélica Calderón-Peláez, Myriam L. Velandia-Romero, J. Manuel Matiz-González, Jaime E. Castellanos

published 26 Nov 2025

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Cecal microbiota of broilers responds similarly to black soldier fly larvae fat and conventional dietary fat sources

Muhammad Rumman Aslam, Bartosz Kierończyk, Piotr Szymkowiak, Liliana Ciesielska, Mateusz Rawski, Robert Mikuła, Damian Józefiak

published 25 Nov 2025

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Emergence of norovirus GII.17[P16] in adult patients with acute gastroenteritis in Thailand during 2021−2023

Leera Kittigul, Thongthiw Pairoh, Kitwadee Rupprom, Yuwanda Thongpanich, Sukhontha Siri

published 24 Nov 2025

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