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Microbial genomics

A reliable in vitro rumen culture system and workflow for screening anti-methanogenic compounds

Philip P. Laric, Armina Mortazavi, Ewa Węgrzyn, Kathrin Simon, Pauline S. Rittel, Florian M. Trefz, Benedikt Sabass

published 01 Dec 2025

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DOGMA: de novo assembly of densely labelled optical DNA maps using a matrix profile approach

Albertas Dvirnas, Luis Mario Leal-Garza, Zahra Abbaspour, Erik Fröbrant, Karolin Frykholm, Marie Wrande, Linus Sandegren, Fredrik Westerlund, Tobias Ambjörnsson

published 01 Dec 2025

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Neural and endothelial cell-derived extracellular vesicles mediate Zika virus genome dissemination and productive infection in vivo

María-Angélica Calderón-Peláez, Myriam L. Velandia-Romero, J. Manuel Matiz-González, Jaime E. Castellanos

published 26 Nov 2025

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Cecal microbiota of broilers responds similarly to black soldier fly larvae fat and conventional dietary fat sources

Muhammad Rumman Aslam, Bartosz Kierończyk, Piotr Szymkowiak, Liliana Ciesielska, Mateusz Rawski, Robert Mikuła, Damian Józefiak

published 25 Nov 2025

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Emergence of norovirus GII.17[P16] in adult patients with acute gastroenteritis in Thailand during 2021−2023

Leera Kittigul, Thongthiw Pairoh, Kitwadee Rupprom, Yuwanda Thongpanich, Sukhontha Siri

published 24 Nov 2025

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Clinical impact of prophylactic antibiotics in kidney transplantation: A retrospective observational cohort study with historical comparison

Sang Ah Lee, Jin-Myung Kim, Hye Eun Kwon, Youngmin Ko, Joo Hee Jung, Sung Shin, Young Hoon Kim, Sung-Han Kim, Hyunwook Kwon

published 21 Nov 2025

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Whole genome sequencing, characterization and analysis of coronene degrading bacterial strain Halomonas elongata

Thasneema Rafic, Mohammed Alarawi, Omer Salem Alkhnbashi, Assad Al-Thukair, Ajibola H. Okeyode, Karthikeyan G, Alexis Nzila

published 19 Nov 2025

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Silent spread of mcr-9 in ESBL-producing Enterobacteriaceae clinical isolates, Jimma, Ethiopia

Tsegaye Sewunet, Mohammad Razavi, Chaitanya Tellapragada, Christian G. Giske

published 18 Nov 2025

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Triadic relationships between pasture exposure, gastrointestinal parasites, and hindgut microbiomes in grazing lambs

Jack Jefferson, Claire Reigate, Alessandra Giacomini, M. Jordana Rivero, Matthew Hitchings, Tamsyn Uren Webster, Konstans Wells

published 17 Nov 2025

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Exploring gut microbiota and its predicted functions in pulmonary tuberculosis: A multi-regional study using public 16S datasets

Tejaswini Baral, Anwesh Maile, Nagarajaram Hampapathalu Adimurthy, Kavitha Saravu, Chandrashekar Udyavara Kudru, Jitendra Singh, Chiranjay Mukhopadhyay, Mahadev Rao, Mohan K. Manu, Sonal Sekhar Miraj

published 13 Nov 2025

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ReadSeeker: A DNABERT based de-novo read-level gene predictor

Ben Wulf, Piotr Wojciech Dabrowski

published 13 Nov 2025

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Dominance of Zygosaccharomyces and shifts in bacterial pathways: Effects of antimicrobials on composition and diversity of the Ceratitis capitata bacterial and fungal microbiome

Maria Cecilia Rasuk, Alfonsina Palladini, Andrea Moyano, Viviana Díaz, Antonella Giudice, Gisela Castillo, Solana Abraham, Juan Rull, Anja Poehlein, Rolf Daniel, Julian Rafael Dib

published 12 Nov 2025

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Differentiation of the bacterial communities associated with Orbicella faveolata across different growth conditions and life-cycle stages

Amanda Pérez-Trejo, Ma. Leopoldina Aguirre-Macedo, Anastazia T. Banaszak, José Q. García-Maldonado

published 07 Nov 2025

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