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Microbial genomics

Isolation and Characterization of Numerous Novel Phages Targeting Diverse Strains of the Ubiquitous and Opportunistic Pathogen Achromobacter xylosoxidans

Johannes Wittmann, Brigitte Dreiseikelmann, [ ... ], Johannes Sikorski

The Living Dead: Bacterial Community Structure of a Cadaver at the Onset and End of the Bloat Stage of Decomposition

Embriette R. Hyde, Daniel P. Haarmann, [ ... ], Joseph F. Petrosino

Microbiome restoration diet improves digestion, cognition and physical and emotional wellbeing

Kate Lawrence, Jeannette Hyde

The Susceptibility of Pseudomonas aeruginosa Strains from Cystic Fibrosis Patients to Bacteriophages

Christiane Essoh, Yann Blouin, [ ... ], Christine Pourcel

Mitochondrial dysfunction in the gastrointestinal mucosa of children with autism: A blinded case-control study

Shannon Rose, Sirish C. Bennuri, [ ... ], Richard Eugene Frye

Phylogeny of Bacterial and Archaeal Genomes Using Conserved Genes: Supertrees and Supermatrices

Jenna Morgan Lang, Aaron E. Darling, Jonathan A. Eisen

Gut Microbiome Metagenomics Analysis Suggests a Functional Model for the Development of Autoimmunity for Type 1 Diabetes

Christopher T. Brown, Austin G. Davis-Richardson, [ ... ], Eric W. Triplett

Hypothesis Testing and Power Calculations for Taxonomic-Based Human Microbiome Data

Patricio S. La Rosa, J. Paul Brooks, [ ... ], William D. Shannon

Analysis of the Lung Microbiome in the “Healthy” Smoker and in COPD

John R. Erb-Downward, Deborah L. Thompson, [ ... ], Gary B. Huffnagle

Pseudomonas aeruginosa Keratitis in Mice: Effects of Topical Bacteriophage KPP12 Administration

Ken Fukuda, Waka Ishida, [ ... ], Atsuki Fukushima

Expanding the Diversity of Mycobacteriophages: Insights into Genome Architecture and Evolution

Welkin H. Pope, Deborah Jacobs-Sera, [ ... ], Graham F. Hatfull

Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets

Robert Schmieder, Robert Edwards

An Integrated Pipeline for de Novo Assembly of Microbial Genomes

Andrew Tritt, Jonathan A. Eisen, Marc T. Facciotti, Aaron E. Darling

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