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Microbial genomics

Processing of Genome 5′ Termini as a Strategy of Negative-Strand RNA Viruses to Avoid RIG-I-Dependent Interferon Induction

Matthias Habjan, Ida Andersson, Jonas Klingström, Michael Schümann, Arnold Martin, Petra Zimmermann, Valentina Wagner, Andreas Pichlmair, Urs Schneider, Elke Mühlberger, Ali Mirazimi, Friedemann Weber

published 30 Apr 2008

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Rickettsia Phylogenomics: Unwinding the Intricacies of Obligate Intracellular Life

Joseph J. Gillespie, Kelly Williams, Maulik Shukla, Eric E. Snyder, Eric K. Nordberg, Shane M. Ceraul, Chitti Dharmanolla, Daphne Rainey, Jeetendra Soneja, Joshua M. Shallom, Nataraj Dongre Vishnubhat, Rebecca Wattam, Anjan Purkayastha, Michael Czar, Oswald Crasta, Joao C. Setubal, Abdu F. Azad, Bruno S. Sobral

published 16 Apr 2008

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Restricted Expression of Epstein-Barr Virus Latent Genes in Murine B Cells Derived from Embryonic Stem Cells

Magdalena Zychlinska, Heidrun Herrmann, Ursula Zimber-Strobl, Wolfgang Hammerschmidt

published 16 Apr 2008

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Environmental Adaptation: Genomic Analysis of the Piezotolerant and Psychrotolerant Deep-Sea Iron Reducing Bacterium Shewanella piezotolerans WP3

Fengping Wang, Jianbin Wang, Huahua Jian, Bing Zhang, Shengkang Li, Feng Wang, Xiaowei Zeng, Lei Gao, Douglas Hoyt Bartlett, Jun Yu, Songnian Hu, Xiang Xiao

published 09 Apr 2008

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Improving Phrap-Based Assembly of the Rat Using “Reliable” Overlaps

Michael Roberts, Aleksey V. Zimin, Wayne Hayes, Brian R. Hunt, Cevat Ustun, James R. White, Paul Havlak, James Yorke

published 19 Mar 2008

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Comparative Analysis of Acinetobacters: Three Genomes for Three Lifestyles

David Vallenet, Patrice Nordmann, Valérie Barbe, Laurent Poirel, Sophie Mangenot, Elodie Bataille, Carole Dossat, Shahinaz Gas, Annett Kreimeyer, Patricia Lenoble, Sophie Oztas, Julie Poulain, Béatrice Segurens, Catherine Robert, Chantal Abergel, Jean-Michel Claverie, Didier Raoult, Claudine Médigue, Jean Weissenbach, Stéphane Cruveiller

published 19 Mar 2008

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Accumulating Variation at Conserved Sites in Potyvirus Genomes Is Driven by Species Discovery and Affects Degenerate Primer Design

Linda Zheng, Paul J. Wayper, Adrian J. Gibbs, Mathieu Fourment, Brendan C. Rodoni, Mark J. Gibbs

published 13 Feb 2008

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Comparative Bacterial Proteomics: Analysis of the Core Genome Concept

Stephen J. Callister, Lee Ann McCue, Joshua E. Turse, Matthew E. Monroe, Kenneth J. Auberry, Richard D. Smith, Joshua N. Adkins, Mary S. Lipton

published 06 Feb 2008

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The Sorcerer II Global Ocean Sampling Expedition: Metagenomic Characterization of Viruses within Aquatic Microbial Samples

Shannon J. Williamson, Douglas B. Rusch, Shibu Yooseph, Aaron L. Halpern, Karla B. Heidelberg, John I. Glass, Cynthia Andrews-Pfannkoch, Douglas Fadrosh, Christopher S. Miller, Granger Sutton, Marvin Frazier, J. Craig Venter

published 23 Jan 2008

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Genome Biology of Actinobacillus pleuropneumoniae JL03, an Isolate of Serotype 3 Prevalent in China

Zhuofei Xu, Yan Zhou, Liangjun Li, Rui Zhou, Shaobo Xiao, Yun Wan, Sihua Zhang, Kai Wang, Wei Li, Lu Li, Hui Jin, Mingsong Kang, Baolige Dalai, Tingting Li, Lei Liu, Yangyi Cheng, Lei Zhang, Tao Xu, Huajun Zheng, Shiying Pu, Bofei Wang, Wenyi Gu, Xiang-Lin Zhang, Geng-Feng Zhu, Shengyue Wang, Guo-Ping Zhao, Huanchun Chen

published 16 Jan 2008

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Identification of Prophages in Bacterial Genomes by Dinucleotide Relative Abundance Difference

K. V. Srividhya, V. Alaguraj, G. Poornima, Dinesh Kumar, G. P. Singh, L. Raghavenderan, A. V. S. K. Mohan Katta, Preeti Mehta, S. Krishnaswamy

published 21 Nov 2007

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Horizontal Gene Transfer Regulation in Bacteria as a “Spandrel” of DNA Repair Mechanisms

Saliou Fall, Anne Mercier, Franck Bertolla, Alexandra Calteau, Laurent Gueguen, Guy Perrière, Timothy M. Vogel, Pascal Simonet

published 24 Oct 2007

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Deinococcus geothermalis: The Pool of Extreme Radiation Resistance Genes Shrinks

Kira S. Makarova, Marina V. Omelchenko, Elena K. Gaidamakova, Vera Y. Matrosova, Alexander Vasilenko, Min Zhai, Alla Lapidus, Alex Copeland, Edwin Kim, Miriam Land, Konstantinos Mavromatis, Samuel Pitluck, Paul M. Richardson, Chris Detter, Thomas Brettin, Elizabeth Saunders, Barry Lai, Bruce Ravel, Kenneth M. Kemner, Yuri I. Wolf, Alexander Sorokin, Anna V. Gerasimova, Mikhail S. Gelfand, James K. Fredrickson, Eugene V. Koonin, Michael J. Daly

published 26 Sep 2007

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