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Microbial genomics

Genome Analysis of the Anaerobic Thermohalophilic Bacterium Halothermothrix orenii

Konstantinos Mavromatis, Natalia Ivanova, Iain Anderson, Athanasios Lykidis, Sean D. Hooper, Hui Sun, Victor Kunin, Alla Lapidus, Philip Hugenholtz, Bharat Patel, Nikos C. Kyrpides

published 15 Jan 2009

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Origins of the Xylella fastidiosa Prophage-Like Regions and Their Impact in Genome Differentiation

Alessandro de Mello Varani, Rangel Celso Souza, Helder I. Nakaya, Wanessa Cristina de Lima, Luiz Gonzaga Paula de Almeida, Elliot Watanabe Kitajima, Jianchi Chen, Edwin Civerolo, Ana Tereza Ribeiro Vasconcelos, Marie-Anne Van Sluys

published 31 Dec 2008

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A Systematic Survey of Mini-Proteins in Bacteria and Archaea

Fengyu Wang, Jingfa Xiao, Linlin Pan, Ming Yang, Guoqiang Zhang, Shouguang Jin, Jun Yu

published 24 Dec 2008

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BRED: A Simple and Powerful Tool for Constructing Mutant and Recombinant Bacteriophage Genomes

Laura J. Marinelli, Mariana Piuri, Zuzana Swigoňová, Amrita Balachandran, Lauren M. Oldfield, Julia C. van Kessel, Graham F. Hatfull

published 17 Dec 2008

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Gene Order Phylogeny of the Genus Prochlorococcus

Haiwei Luo, Jian Shi, William Arndt, Jijun Tang, Robert Friedman

published 03 Dec 2008

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Phylotyping and Functional Analysis of Two Ancient Human Microbiomes

Raúl Y. Tito, Simone Macmil, Graham Wiley, Fares Najar, Lauren Cleeland, Chunmei Qu, Ping Wang, Frederic Romagne, Sylvain Leonard, Agustín Jiménez Ruiz, Karl Reinhard, Bruce A. Roe, Cecil M. Lewis Jr.

published 11 Nov 2008

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Locked Nucleic Acid Pentamers as Universal PCR Primers for Genomic DNA Amplification

Zhen Sun, Zhi Chen, Xiaoli Hou, Shuping Li, Haihong Zhu, Ji Qian, Daru Lu, Wei Liu

published 11 Nov 2008

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Modeling the Fitness Consequences of a Cyanophage-Encoded Photosynthesis Gene

Jason G. Bragg, Sallie W. Chisholm

published 29 Oct 2008

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Complete Genome Viral Phylogenies Suggests the Concerted Evolution of Regulatory Cores and Accessory Satellites

Paolo Marinho de Andrade Zanotto, David C. Krakauer

published 22 Oct 2008

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Comparison of Classifier Fusion Methods for Predicting Response to Anti HIV-1 Therapy

André Altmann, Michal Rosen-Zvi, Mattia Prosperi, Ehud Aharoni, Hani Neuvirth, Eugen Schülter, Joachim Büch, Daniel Struck, Yardena Peres, Francesca Incardona, Anders Sönnerborg, Rolf Kaiser, Maurizio Zazzi, Thomas Lengauer

published 21 Oct 2008

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Re-Assembly of the Genome of Francisella tularensis Subsp. holarctica OSU18

Daniela Puiu, Steven L. Salzberg

published 17 Oct 2008

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Chemical Addressability of Ultraviolet-Inactivated Viral Nanoparticles (VNPs)

Chris Rae, Kristopher J. Koudelka, Giuseppe Destito, Mayra N. Estrada, Maria J. Gonzalez, Marianne Manchester

published 02 Oct 2008

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Metagenomic Analysis of Lysogeny in Tampa Bay: Implications for Prophage Gene Expression

Lauren McDaniel, Mya Breitbart, Jennifer Mobberley, Amy Long, Matthew Haynes, Forest Rohwer, John H. Paul

published 23 Sep 2008

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