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Microbial genomics

Genomic Signature-Based Identification of Influenza A Viruses Using RT-PCR/Electro-Spray Ionization Mass Spectrometry (ESI-MS) Technology

Varough M. Deyde, Rangarajan Sampath, Rebecca J. Garten, Patrick J. Blair, Christopher A. Myers, Christian Massire, Heather Matthews, Pavel Svoboda, Matthew S. Reed, Jan Pohl, Alexander I. Klimov, Larisa V. Gubareva

published 12 Oct 2010

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CRISPR Associated Diversity within a Population of Sulfolobus islandicus

Nicole L. Held, Alfa Herrera, Hinsby Cadillo-Quiroz, Rachel J. Whitaker

published 28 Sep 2010

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Complete Genome Sequence of Crohn's Disease-Associated Adherent-Invasive E. coli Strain LF82

Sylvie Miquel, Eric Peyretaillade, Laurent Claret, Amélie de Vallée, Carole Dossat, Benoit Vacherie, El Hajji Zineb, Beatrice Segurens, Valerie Barbe, Pierre Sauvanet, Christel Neut, Jean-Frédéric Colombel, Claudine Medigue, Francisco J. M. Mojica, Pierre Peyret, Richard Bonnet, Arlette Darfeuille-Michaud

published 17 Sep 2010

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Evidence of Transfer by Conjugation of Type IV Secretion System Genes between Bartonella Species and Rhizobium radiobacter in Amoeba

Watcharee Saisongkorh, Catherine Robert, Bernard La Scola, Didier Raoult, Jean-Marc Rolain

published 13 Sep 2010

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Comparative Genomics of Gardnerella vaginalis Strains Reveals Substantial Differences in Metabolic and Virulence Potential

Carl J. Yeoman, Suleyman Yildirim, Susan M. Thomas, A. Scott Durkin, Manolito Torralba, Granger Sutton, Christian J. Buhay, Yan Ding, Shannon P. Dugan-Rocha, Donna M. Muzny, Xiang Qin, Richard A. Gibbs, Steven R. Leigh, Rebecca Stumpf, Bryan A. White, Sarah K. Highlander, Karen E. Nelson, Brenda A. Wilson

published 26 Aug 2010

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Deep Sequencing of the Vaginal Microbiota of Women with HIV

Ruben Hummelen, Andrew D. Fernandes, Jean M. Macklaim, Russell J. Dickson, John Changalucha, Gregory B. Gloor, Gregor Reid

published 12 Aug 2010

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sRNAscanner: A Computational Tool for Intergenic Small RNA Detection in Bacterial Genomes

Jayavel Sridhar, Suryanarayanan Ramkumar Narmada, Radhakrishnan Sabarinathan, Hong-Yu Ou, Zixin Deng, Kanagaraj Sekar, Ziauddin Ahamed Rafi, Kumar Rajakumar

published 05 Aug 2010

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The Glycobiome of the Rumen Bacterium Butyrivibrio proteoclasticus B316^T Highlights Adaptation to a Polysaccharide-Rich Environment

William J. Kelly, Sinead C. Leahy, Eric Altermann, Carl J. Yeoman, Jonathan C. Dunne, Zhanhao Kong, Diana M. Pacheco, Dong Li, Samantha J. Noel, Christina D. Moon, Adrian L. Cookson, Graeme T. Attwood

published 03 Aug 2010

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Global Analyses of Small Interfering RNAs Derived from Bamboo mosaic virus and Its Associated Satellite RNAs in Different Plants

Kuan-Yu Lin, Chi-Ping Cheng, Bill Chia-Han Chang, Wei-Chi Wang, Ying-Wen Huang, Yun-Shien Lee, Hsien-Da Huang, Yau-Heiu Hsu, Na-Sheng Lin

published 02 Aug 2010

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Occupancy Modeling, Maximum Contig Size Probabilities and Designing Metagenomics Experiments

Stephen A. Stanhope

published 29 Jul 2010

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Phylogenomic Analysis of Marine Roseobacters

Kai Tang, Hongzhan Huang, Nianzhi Jiao, Cathy H. Wu

published 15 Jul 2010

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Read Length and Repeat Resolution: Exploring Prokaryote Genomes Using Next-Generation Sequencing Technologies

Matt J. Cahill, Claudio U. Köser, Nicholas E. Ross, John A. C. Archer

published 12 Jul 2010

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Genome Erosion in a Nitrogen-Fixing Vertically Transmitted Endosymbiotic Multicellular Cyanobacterium

Liang Ran, John Larsson, Theoden Vigil-Stenman, Johan A. A. Nylander, Karolina Ininbergs, Wei-Wen Zheng, Alla Lapidus, Stephen Lowry, Robert Haselkorn, Birgitta Bergman

published 08 Jul 2010

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