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Microbial genomics

Pebble and Rock Band: Heuristic Resolution of Repeats and Scaffolding in the Velvet Short-Read de Novo Assembler

Daniel R. Zerbino, Gayle K. McEwen, Elliott H. Margulies, Ewan Birney

Antigen Diversity in the Parasitic Bacterium Anaplasma phagocytophilum Arises from Selectively-Represented, Spatially Clustered Functional Pseudogenes

Janet E. Foley, Nathan C. Nieto, Anthony Barbet, Patrick Foley

Red-Mediated Transposition and Final Release of the Mini-F Vector of a Cloned Infectious Herpesvirus Genome

Felix Wussow, Helmut Fickenscher, B. Karsten Tischer

Examination of Genome Homogeneity in Prokaryotes Using Genomic Signatures

Jon Bohlin, Eystein Skjerve

The Association of Virulence Factors with Genomic Islands

Shannan J. Ho Sui, Amber Fedynak, [ ... ], Fiona S. L. Brinkman

Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System

Konstantinos Mavromatis, Ken Chu, [ ... ], Nikos C. Kyrpides

Genome Sequence of the Versatile Fish Pathogen Edwardsiella tarda Provides Insights into its Adaptation to Broad Host Ranges and Intracellular Niches

Qiyao Wang, Minjun Yang, [ ... ], Yuanxing Zhang

Accurate Strand-Specific Quantification of Viral RNA

Nicole E. Plaskon, Zach N. Adelman, Kevin M. Myles

Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli

Alfredo Mendoza-Vargas, Leticia Olvera, [ ... ], Enrique Morett

The Replicase Gene of Avian Coronavirus Infectious Bronchitis Virus Is a Determinant of Pathogenicity

Maria Armesto, Dave Cavanagh, Paul Britton

Metagenomic Analysis of Respiratory Tract DNA Viral Communities in Cystic Fibrosis and Non-Cystic Fibrosis Individuals

Dana Willner, Mike Furlan, [ ... ], Forest Rohwer

The Feasibility of Using High Resolution Genome Sequencing of Influenza A Viruses to Detect Mixed Infections and Quasispecies

Muthannan A. Ramakrishnan, Zheng Jin Tu, [ ... ], Srinand Sreevatsan

Transcriptional Signature and Memory Retention of Human-Induced Pluripotent Stem Cells

Maria C. N. Marchetto, Gene W. Yeo, [ ... ], Alysson R. Muotri

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