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Microbial genomics

Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli

Alfredo Mendoza-Vargas, Leticia Olvera, [ ... ], Enrique Morett

The Replicase Gene of Avian Coronavirus Infectious Bronchitis Virus Is a Determinant of Pathogenicity

Maria Armesto, Dave Cavanagh, Paul Britton

Metagenomic Analysis of Respiratory Tract DNA Viral Communities in Cystic Fibrosis and Non-Cystic Fibrosis Individuals

Dana Willner, Mike Furlan, [ ... ], Forest Rohwer

The Feasibility of Using High Resolution Genome Sequencing of Influenza A Viruses to Detect Mixed Infections and Quasispecies

Muthannan A. Ramakrishnan, Zheng Jin Tu, [ ... ], Srinand Sreevatsan

Transcriptional Signature and Memory Retention of Human-Induced Pluripotent Stem Cells

Maria C. N. Marchetto, Gene W. Yeo, [ ... ], Alysson R. Muotri

Optimizing Taq Polymerase Concentration for Improved Signal-to-Noise in the Broad Range Detection of Low Abundance Bacteria

Rudolph Spangler, Noel L. Goddard, David S. Thaler

Distinct Gene Number-Genome Size Relationships for Eukaryotes and Non-Eukaryotes: Gene Content Estimation for Dinoflagellate Genomes

Yubo Hou, Senjie Lin

The dif/Xer Recombination Systems in Proteobacteria

Christophe Carnoy, Claude-Alain Roten

Symbiotic Virus at the Evolutionary Intersection of Three Types of Large DNA Viruses; Iridoviruses, Ascoviruses, and Ichnoviruses

Yves Bigot, Sylvaine Renault, [ ... ], Brian A. Federici

Hidden Chromosome Symmetry: In Silico Transformation Reveals Symmetry in 2D DNA Walk Trajectories of 671 Chromosomes

Maria S. Poptsova, Sergei A. Larionov, [ ... ], Alexander Loskutov

Evaluation of Three Automated Genome Annotations for Halorhabdus utahensis

Peter Bakke, Nick Carney, [ ... ], A. Malcolm Campbell

Virus-Host Coevolution: Common Patterns of Nucleotide Motif Usage in Flaviviridae and Their Hosts

Francisco P. Lobo, Bruno E. F. Mota, [ ... ], Glória R. Franco

Multiple Horizontal Gene Transfer Events and Domain Fusions Have Created Novel Regulatory and Metabolic Networks in the Oomycete Genome

Paul Francis Morris, Laura Rose Schlosser, [ ... ], Nicholas Provart

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