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Microbial genomics

The effect of different milk pretreatment methods on microbiome community development during Herrgårds cheese production and ripening

Juan Antonio Rodríguez, Luisa Santos-Bay, Apurva Narechania, Christian Carøe, Kimmo Sirén, Sarah S. T. Mak, Ida Broman Nielsen, Max Ramsøe, Thomas S. Pontén, Søren Lillevang, Lene Tranberg Andersen, M. Thomas P. Gilbert

published 14 Jul 2026

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Comparative analysis of the mucosal and shell microbiota of Trachemys scripta elegans across multiple urban freshwater habitats

Mariangel Correa Orellana, Coleman Odom, Anastasia Kuzmina, Jessica Urias-Quiroz, Laura Arias, Alyssa Kwiatowski, Georgina Aitolo, Patrick Martin, Colby Seitze, Meredith Winfield, Aspen Frisch, Jenna Tansiongco, Vishwa Venkatesan, Nadja La Point, Travis J. Laduc, Justin C. Havird

published 10 Jul 2026

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Metataxonomic insights into lactic acid bacteria diversity in artisanal coalho cheese from the Caatinga biome

Ruana Célia Gomes De Morais Costa Rodrigues, Emmanuella de Oliveira Moura Araújo, Samira Teixeira da Silva, Gustavo Felipe Correia Sales, Danielle Cavalcanti Sales, Mauricio Tolstoi do Santos Ferreira, Cláudio Vaz Di Mambro Ribeiro, Luis Medeiros de Lucena, Claudio Cipolat-Gotet, Maria Taciana Holanda Cavalcanti, Adriano Henrique do Nascimento Rangel

published 09 Jul 2026

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Cloacal microbiome variation in wild and captive Eastern Indigo Snakes (Drymarchon couperi) with and without Cryptosporidium serpentis infection

Christopher Roger Brown, Mark Nikolaus Yacoub, James E. Bogan, Matthew D. Buehler, Michelle Lea Hoffman, Janina Alessandra Krumbeck, Zachary J. Loughman

published 09 Jul 2026

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In silico antimicrobial resistance profiling of 1,240 Stenotrophomonas maltophilia genomes: AMR gene prevalence, temporal evolution, and ST-specific associations

Laith B. Alhusseini, Firas Nabeeh Jaafar, Ahmed R. Alsharmani, Ebrahim Kouhsari, Mohammad Sholeh

published 09 Jul 2026

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Geographic and Orientia infection status influence on the bacterial microbiome of free-living chiggers in North Carolina, USA

Kaiying Chen, Nicholas V. Travanty, Reuben A. Garshong, Gideon Wasserberg, Charles S. Apperson, R. Michael Roe, Loganathan Ponnusamy

published 08 Jul 2026

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Genotype-specific root morphology and metabolic traits shape bacterial communities and tolerance to Fusarium root rot in wheat

Omar Hafidi, Marie Simonin, Florent Magot, Yuka Munakata, Alan Kergunteuil, Romain Larbat, Jérémy Grosjean, Alain Hehn, Mathieu Barret, Sophie Slezack

published 07 Jul 2026

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Isolation and preliminary characterization of extracellular vesicles from bottlenose dolphin (Tursiops truncatus) and long-finned pilot whale (Globicephala melas) blow

Valentina Moccia, Cinzia Centelleghe, Andrea Zendrini, Selene Tassoni, Luca Ceolotto, Bertrand Bouchard, Eva Alvarez, Gaia Pesce, Paolo Bergese, Annalisa Radeghieri, Sandro Mazzariol, Valentina Zappulli

published 01 Jul 2026

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An exercise-associated gut microbiota signature enhances endurance performance: A study combining a human cohort and a mice FMT model

Xiongbao Zhang, Yating Fu, Jiahui Chen, Hao Shen, Yumeng Du, Jun Wu, Hongjing Lai, Yu Liu, Jingbo Chen, Xiaomei Hou, Wenjun Chang, Xuefei Hu

published 01 Jul 2026

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Linking shelter conditions to health: A multisystem analysis of stress, metabolism, and fecal microbiota in dogs

Adul Saengthong, Janine L. Brown, Patcharapa Towiboon, Khanittha Punturee, Songphon Buddhasiri, Korakot Nganvongpanit, Veerasak Punyapornwithaya, Wuithipong Tocharoennirattisai, Jaruwan Khonmee

published 01 Jul 2026

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Characterization of genomic diversity in bacteriophages infecting Rhodococcus

Dominic R. Garza, Daria L. Di Blasi, Karen K. Klyczek, James A. Bruns, Randall J. DeJong, Ann M. Findley, Deborah Jacobs-Sera, Ana E. Garcia-Vedrenne, Sally Molloy, Colin M. Lewis, Isabel Light, Brianna Empson, Maisam Ghannam, Jorge Alfred Bonilla, Steven G. Cresawn, Rebecca A. Garlena, Daniel A. Russell, Graham F. Hatfull, Amanda C. Freise

published 29 Jun 2026

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Seasonal dynamics in sheep fecal microbiome and soil bacterial communities under grazing management

Maria Chiara Fabbri, Iliyass Biada, Maria Teresa Ceccherini, Christian Maltecca, Beatrice Fiore, Francesco Sirtori, Lina Pulido-Rodríguez, Giovanni Mastrolonardo, Riccardo Bozzi, Francesco Tiezzi

published 29 Jun 2026

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An integrative multi-omics approach points to membrane composition as a key factor in E. coli persistence

Silvia J. Cañas-Duarte, Lei Sun, María Isabel Pérez-López, Cornelia Herrfurth, Lina M. Contreras, Ivo Feussner, Chad Leidy, Johan Paulsson, Diego M. Riaño-Pachón, Juan M. Pedraza, Silvia Restrepo

published 29 Jun 2026

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