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Microbial genomics

Accessible, robust ultrahigh-throughput microbiome analysis via integration of uniform droplet-templated emulsification and FACS

Wannes Nauwynck, Karoline Faust, Nico Boon

published 09 Sep 2026

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Comparative prevalence of the mercury resistance gene merA in human feces, food, and environmental water from Japan, Vietnam, and Ghana

Yen Hai Le, Judith Dzifa Azumah, Diep Thi Khong, Thang Nam Nguyen, Cornelia Appiah-Kwarteng, Kazuaki Matsui, Mayumi Yamamoto, Kaori Tanaka, Yoshimasa Yamamoto

published 08 Sep 2026

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Breastmilk microbiota and its association with infant iron deficiency anaemia: A 16S rRNA metagenomic study in Peruvian mothers cohort

Arturo Octavio Gonzales-Rodriguez, Luis Edgardo Gonzales-Huerta, Paolo Alberto Wong Chero, Luz Estela Vera-Silva, Guillermo Uceda-Campos, Francesca Antonia Reale

published 27 Aug 2026

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First complete genome sequences and transcript expression profiling of tea plant necrotic ring blotch virus isolates from Iran

Fereshteh Esmaeilzadeh, Davoud Koolivand, Abozar Ghorbani

published 25 Aug 2026

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FusionPHI: A phage-host interaction prediction network model based on attention-driven multi-modal feature fusion

Xiangjun Li, Ruitao Li, Zhui Tu, Qingting Wei

published 21 Aug 2026

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Microbiome modulation in regeneration in jellyfish

Aki Ohdera, Matthew Wang, Maille Mansbridge, Changhua Yu, Ryan Ginn, Hannah DeMerit, Isabella Guillen, Christy Lam, Andrew Hyunsoo Kim, Gianni Notaro, Jonathan Ong, David Herman, Lea Goentoro

published 21 Aug 2026

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Sex differences in the effects of shift work-like schedules on gut microbiome and intestinal barrier in relation to stroke survival

Ella Barnum, Jonathan L. Turck, Karienn A. Souza, Kathiresh Kumar Mani, Rachel Pilla, Amutha Selvamani, Farida Sohrabji, David J. Earnest

published 14 Aug 2026

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MyD88 restricts dysbiosis-mediated inflammation in filaggrin deficient skin

Meng-Jen Wu, Advaitaa Ravipati, Yu Wang, Laine E. Feller, Alyssa Chu, Rishi Damarla, Zhiyang Li, Lam C. Tsoi, Ryleigh Griffin, Peng Hou, Hai Liang, Raif Geha, Julia A. Segre, Heidi H. Kong, Johann E. Gudjonsson, Nathan K. Archer

published 14 Aug 2026

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Study protocol: Effect of inulin supplementation on gut microbiota in patients with oral lichen planus — A double-blind, randomised, placebo-controlled parallel-group trial

Koki Nambu, Naoki Kaneko, Shiho Yokomizo, Hu Chen, Lijing Yan, Wang Shiyao, Ryusei Shizuma, Eiji Iwata, Yukiko Ohyama, Shohei Akagawa, Soichiro Ibaragi, Shintaro Kawano, Masafumi Moriyama

published 13 Aug 2026

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CLR-Seq: A pipeline to identify bacterial microbiota species with immune-relevant glycan moieties through human C-type lectin receptor interaction

Jasper Mol, Rob van Dalen, Yvonne Pannekoek, Malgorzata E. Mnich, Marcel R. de Zoete, Mark Davids, Hilde Herrema, Nina M. van Sorge

published 13 Aug 2026

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Effect of reused litter on early cecal microbiota succession and the immune cells distribution in layer chickens

Nimra Khalid, Shuja Majeed, Bikas Raj Shah, Ali Nazmi

published 12 Aug 2026

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DELTA: Strengthening human biological resilience with an N=1 digital health and dynamic biomarker protocol

Peter Wang, Nigel Foo, Chengxun Su, Nicole Yong Ting Leung, Shang Wei Song, Gyula Seres, Yoann Sapanel, Lissa Hooi, Avelle Wong, Yoong Hun Ong, Poonam Rai, Hyunjin Park, Han Shi Jocelyn Chew, Laureen Yi Ting Wang, Jonathan Wei Jie Lee, Xavier Tadeo, Dean Ho

published 12 Aug 2026

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Development of a rapid comQ-targeted quantitative polymerase chain reaction assay for specific identification and quantification of Bacillus subtilis subsp. natto

Mayu Takizawa, Daisuke Kyoui, Rika Horiguchi, Ayano Sakurai, Taketo Kawarai, Naoki Narisawa

published 03 Aug 2026

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