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Microbial genomics

ACMTF-R: Supervised multi-omics data integration uncovering shared and distinct outcome-associated variation

Geert Roelof van der Ploeg, Fred T. G. White, Rasmus Riemer Jakobsen, Johan A. Westerhuis, Anna Heintz-Buschart, Age K. Smilde

published 12 Jan 2026

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Exploring the relationships between the gut microbiome composition and movement patterns of laying hens in a multitier cage-free housing system

Anaïs Cazals, Sabine Gebhardt-Henrich, Quentin Berger, Marie-Noëlle Rossignol, Deborah Jardet, Michael J. Toscano, Tatiana Zerjal

published 09 Jan 2026

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Fecal butyrate and deoxycholic acid quantitation for rapid assessment of the gut microbiome

Michael W. Mullowney, Angelica Moran, Antonio Hernandez, Mary McMillin, Amber R. Rose, David Moran, Jessica Little, Ann B. Nguyen, Bhakti K. Patel, Christopher J. Lehmann, Matthew A. Odenwald, Eric G. Pamer, Kiang-Teck J. Yeo, Ashley M. Sidebottom

published 09 Jan 2026

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High microbial diversity in glacial habitats uncoupled from the specialized microbiomes of resident chironomid fauna

Valeria Lencioni, Alessandra Tondello, Isabel Martinez-Sañudo, Saptarathi Deb, Lucia Giagnoni, Augusto Zanella, Giuseppe Concheri, Piergiorgio Stevanato, Luca Mazzon, Andrea Squartini

published 08 Jan 2026

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Genomic and chemical insights into a human lectin-binding extracellular polysaccharides from Parageobacillus toebii strain H-70

Diana Ghevondyan, Armine Margaryan, Fabrizio Chiodo, Yvette van Kooyk, Ilaria Finore, Annarita Poli, Hovik Panosyan

published 08 Jan 2026

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Microbial profile along the maternal-infant axis: Early characterization and relationships in breastfeeding women and their newborns in a Colombian population

Diana Carolina Londoño-Sierra, Claudia Jaramillo-Mazo, Shadia Blel, Victoria Mesa, Sandra Lucia Restrepo-Mesa, Julián Paul Martínez Galán, Laura Sierra-Zapata

published 08 Jan 2026

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Soil microbiome perturbation impedes growth of Bouteloua curtipendula and increases relative abundance of soil microbial pathogens

Alisiara Hobbs, Daisy Ochoa-Rojas, Christine E. Humphrey, John A. Kyndt, Tyler C. Moore

published 05 Jan 2026

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Diversity, recombination and misclassification in the family Geminiviridae: Insight from bioinformatics analysis

Moshood Olamide Lateef, Dauda Nathaniel, Bolaji Osundahunsi, Neil Arvin Bretana

published 02 Jan 2026

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Whole-genome sequencing of Burkholderia glumae strains from Thailand reveals potential horizontal gene transfer with Burkholderia pseudomallei

Sujin Patarapuwadol, Woranich Hintong, Pornpavee Nualnisachol, Natnicha Wankaew, Worarat Kruasuwan, Thanchanok Sawaengwong, Phatcharin Laosena, Jiraphan Premsuriya

published 31 Dec 2025

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Candidate orphan genes: Reassessing uniqueness

Sheetalpreet K. Maan, Xuan Y. Butzin, Steven X. Ge, Nicholas C. Butzin

published 31 Dec 2025

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Exploring gut microbiome and nutritional status among children with Autism Spectrum Disorder (MY-ASD Microbiome): A study protocol

Kai Xuan Wong, Seong Ting Chen, Jun Jean Ong, Wan Ying Gan, Nor Azian Abdul Murad, Chun Wie Chong, Nurul Hanis Ramzi

published 31 Dec 2025

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Systematic analysis of spontaneous tandem genome amplification events in Yersinia pestis

Dmitry N. Konanov, Olga N. Liubimova, Alexander V. Kovrizhnikov, Ignat V. Sonets, Alina N. Balykova, Alexandra V. Lukina-Gronskaya, Anna S. Speranskaya, Danil V. Krivonos, Galina A. Eroshenko, Elena N. Ilina, Vadim M. Govorun, Vladimir V. Kutyrev

published 31 Dec 2025

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Transformation of Tn7 insertion elements across strains of Vibrio fischeri

Andrew G. Cecere, Chris Muriel-Mundo, Derek J. Fisher, Tim I. Miyashiro

published 30 Dec 2025

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