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Microbial genomics

First identification of ORF virus causing contagious ecthyma in Morocco (MOR20): Genomic, phylogenetic, and sequence variants analyses for vaccine design

Zouhair Elkarhat, Ikram Tifrouin, Zahra Bamouh, Khalid Omari Tadlaoui, Mehdi Elharrak

published 12 May 2025

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DNA extraction protocols for animal fecal material on blood spot cards

Ann-Katrin Llarena, Thomas H. A. Haverkamp, Wenche Støldal Gulliksen, Kristin Herstad, Arne Holst-Jensen, Eystein Skjerve, Lisbeth Rannem, Sabrina Rodriguez-Campos, Øivind Øines

published 12 May 2025

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Beneficial effect of consuming milk containing only A2 beta-casein on gut microbiota: A single-center, randomized, double-blind, cross-over study

Chin-Hee Song, Nayoung Kim, Yonghoon Choi, Seulgi Kim, Kyung Su Kim, Min Hee Park, Sang Hee Lee, Dong Ho Lee

published 08 May 2025

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Metagenomic analysis evidences a core virome in Anopheles darlingi from three contrasting Colombian ecoregions

Juan C. Hernandez-Valencia, Giovan F. Gómez, Margarita M. Correa

published 30 Apr 2025

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The canine vaginal microbiome during heat and fertility in healthy breeding dogs

Anna Sophia Leps, Eva-Maria Packeiser, Christina Schwens, Benjamin Stoelcker, Semir Doric, Martina Wirkner, Beate Walter, Axel Wehrend, Viktoria Kichmann, Klaus Jung, Sandra Goericke-Pesch

published 28 Apr 2025

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Rapidly obtaining genome sequence of Severe Fever with Thrombocytopenia Syndrome virus directly from clinical serum specimen using long amplicon based nanopore sequencing workflow

Tingting Tian, Yanhan Wen, Liping Gao, Tiezhu Liu, Xiaoxia Huang, Chuan Li, Shanshan Du, Hao Li, Meijun Guo, Jiandong Li, Shiwen Wang, Dexin Li, Aqian Li, Mifang Liang

published 25 Apr 2025

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In vivo assessment of the effect of gel containing lactic acid and glycogen on vaginal microbiota and pH of asymptomatic women of reproductive age

Adriana Bittencourt Campaner, Ana Carolina Alves Rosário Sica, Flavia Salomão d’ Avila Curi, Giulia Marchetti, Grazielle Suhett Dias, Bianca Luise Teixeira

published 24 Apr 2025

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Temporal changes in cecal luminal and mucosal microbiota of broiler chickens with clinical coccidiosis (Eimeria maxima)

Philip M. Campos, Katarzyna B. Miska, Mark C. Jenkins, Monika Proszkowiec-Weglarz

published 24 Apr 2025

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Genomic insights into the taxonomic status and bioactive gene cluster profiling of Bacillus velezensis RVMD2 isolated from desert rock varnish in Ma’an, Jordan

Sulaiman M. Alnaimat, Saqr Abushattal, Saif M. Dmour, Wajdy J. Al-Awaida, Amani M. Ayyash, Khang Wen Goh

published 24 Apr 2025

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Metagenomic and proteomic analyses reveal similar reproductive microbial profiles and shared functional pathways in uterine immune regulation in mares and jennies

Eva da Silva-Álvarez, Vanessa Gómez-Arrones, Florencia Correa-Fiz, Francisco Eduardo Martín-Cano, Gemma Gaitskell-Phillips, Juan Jesús Carrasco, Joaquín Rey, Inés María Aparicio, Fernando Juan Peña, Juan Manuel Alonso, Cristina Ortega-Ferrusola

published 16 Apr 2025

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Zero inflated high dimensional compositional data with DeepInsight

Jeseok Lee, Byungwon Kim

published 16 Apr 2025

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Isolation of a potentially arsenic-resistant Halomonas elongata strain (ml10562) from hypersaline systems in the Peruvian Andes, Cusco

Shirly Pila-Lacuta, David Pauccar, Jorge Rojas-Vargas, Ulises E. Rodríguez-Cruz, José Luis Sierra, Hugo G. Castelán-Sánchez, María Antonieta Quispe-Ricalde

published 16 Apr 2025

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Cassiopea xamachana microbiome across anatomy, development, and geography

Allison H. Kerwin, Aki Ohdera, Juliet Bier, Devon Goodman, Marta Mammone, Victoria Sharp, Alesandra Echeandía, Mónica Medina

published 11 Apr 2025

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