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Microbial genomics

A study protocol for neonatal sepsis and gut microbiomics among preterm infants admitted at Muhimbili National Hospital, Tanzania

Fatima M. Mussa, Agricola Joachim, Robert Moshiro, Salim S. Masoud, Marylyn M. Addo, Julia Pagel, Ralf Krumkamp, Robin Kobbe, Nahya Salim

published 02 Jun 2025

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Schistosoma mansoni infection causes consistent changes to the fecal bacterial microbiota of mice across and within sites

Mariam A. Mhanna, David T. Gauthier, Lisa M. Shollenberger

published 30 May 2025

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Evaluation of metatranscriptomic sequencing protocols to obtain full-length RNA virus genomes from mammalian tissues

Yiqiao Li, Mariana Polychronopoulou, Ine Boonen, Antonios Fikatas, Sophie Gryseels, Anne Laudisoit, Joelle Gouy de Bellocq, Bram Vrancken, Gkikas Magiorkinis, Philippe Lemey, Magda Bletsa

published 30 May 2025

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The early-life fecal microbiota is associated with litter of origin but not with susceptibility to ETEC F4ab-mediated post-weaning diarrhea in CHCF1 genotyped pigs

Martin Peter Rydal, Louise Ladefoged Poulsen, Jens Peter Nielsen

published 29 May 2025

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Feeding infant formula with low sn-2 palmitate causes changes in newborn’s intestinal environments through an increase in fecal soaped palmitic acid

Atsushi Ito, Hiromichi Shoji, Hiroko Arai, Satsuki Kakiuchi, Keigo Sato, Shinji Jinno, Naoto Takahashi, Kenichi Masumoto, Hitoshi Yoda, Toshiaki Shimizu

published 28 May 2025

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The role of gut leakage and immune cell miss-homing on gut dysbiosis-induced lung inflammation in a DSS mice model

Mariam Wed Eladham, Narjes Saheb Sharif-Askari, Priyadharshini Sekar, Bushra Mdkhana, Balachandar Selvakumar, Baraa Khalid Salah Al-Sheakly, Fatemeh Saheb Sharif-Askari, Ibrahim Hachim, Rabih Halwani

published 28 May 2025

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A new nodule-associated bacterium, Cupriavidus consociatus sp. nov. Isolated from the root nodules of Leucaena sp. and Arachis sp. growing in a cacao field in Chiapas, Mexico

Erika-Yanet Tapia-García, Belén Chávez-Ramírez, Violeta Larios-Serrato, Ivan Arroyo-Herrera, J. Antonio Ibarra, Paulina Estrada-de los Santos

published 27 May 2025

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Characterization of blood microbial population in beef calves with clinical signs of sepsis using 16S rRNA gene sequencing

Giuliano Borriello, Flaminia Valentini, Sara Ferrini, Giorgia Di Muro, Giulia Cagnotti, Elena Grego, Angela Maria Catania, Maria Cristina Stella, Ugo Ala, Patrizia Nebbia, Antonio D’Angelo, Claudio Bellino

published 23 May 2025

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Comparative genomic analysis of Streptococcus suis sequence type 105 and development of a PCR diagnostic tool

Parichart Boueroy, Peechanika Chopjitt, Jednipit Borthong, Thidathip Wongsurawat, Piroon Jenjaroenpun, Rapeephan Duangjanchot, Bhanubong Saiboonjan, Rujirat Hatrongjit, Anusak Kerdsin

published 20 May 2025

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Microbiome and pediatric leukemia, diabetes, and allergies: Systematic review and meta-analysis

Rachel Gallant, Samiha Reza, Joseph L. Wiemels, Mel Greaves

published 20 May 2025

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Benchmarking Differential Abundance Tests for 16S microbiome sequencing data using simulated data based on experimental templates

Eva Kohnert, Clemens Kreutz

published 19 May 2025

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Infection with the entomopathogenic nematodes Steinernema alters the Drosophila melanogaster larval microbiome

Raymond Yau, Christina Pavloudi, Yingying Zeng, Jimmy Saw, Ioannis Eleftherianos

published 16 May 2025

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First identification of ORF virus causing contagious ecthyma in Morocco (MOR20): Genomic, phylogenetic, and sequence variants analyses for vaccine design

Zouhair Elkarhat, Ikram Tifrouin, Zahra Bamouh, Khalid Omari Tadlaoui, Mehdi Elharrak

published 12 May 2025

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