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Microbial genomics

Exploring gut microbiota and its predicted functions in pulmonary tuberculosis: A multi-regional study using public 16S datasets

Tejaswini Baral, Anwesh Maile, Nagarajaram Hampapathalu Adimurthy, Kavitha Saravu, Chandrashekar Udyavara Kudru, Jitendra Singh, Chiranjay Mukhopadhyay, Mahadev Rao, Mohan K. Manu, Sonal Sekhar Miraj

published 13 Nov 2025

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ReadSeeker: A DNABERT based de-novo read-level gene predictor

Ben Wulf, Piotr Wojciech Dabrowski

published 13 Nov 2025

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Dominance of Zygosaccharomyces and shifts in bacterial pathways: Effects of antimicrobials on composition and diversity of the Ceratitis capitata bacterial and fungal microbiome

Maria Cecilia Rasuk, Alfonsina Palladini, Andrea Moyano, Viviana Díaz, Antonella Giudice, Gisela Castillo, Solana Abraham, Juan Rull, Anja Poehlein, Rolf Daniel, Julian Rafael Dib

published 12 Nov 2025

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Differentiation of the bacterial communities associated with Orbicella faveolata across different growth conditions and life-cycle stages

Amanda Pérez-Trejo, Ma. Leopoldina Aguirre-Macedo, Anastazia T. Banaszak, José Q. García-Maldonado

published 07 Nov 2025

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Skin melanin is associated with body temperature regulation in humans and mice

Kale S. Bongers, Santiago Tovar, Zanthia Wiley, Michele Sumler, Nina G. Jablonski, Adewole S. Adamson, Sivasubramanium V. Bhavani

published 07 Nov 2025

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Evaluation of the soil microbiome of three raised beaches in the Devon Island Lowland, High Arctic, Canada

Laura Maretto, Saptarathi Deb, Andrea Squartini, Giuseppe Concheri, Piergiorgio Stevanato, Serenella Nardi, Stefania Cocco, Giuseppe Corti

published 05 Nov 2025

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Evidence for an indigenous female mouse urobiome

Sidra Sohail, Daniel Bushnell, Mark Khemmani, Sridhar Narla, Olivia Lamana, Bhanu Sharma, Robert B. Moreland, Alan J. Wolfe, Catherine S. Forster

published 05 Nov 2025

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Public perceptions of biospecimen sampling and uncertainty in the context of personalised nutrition

Katharine Lee, Estelle Corbett, Rebecca Hafner, Julie Barnett

published 04 Nov 2025

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Genomic characteristics of Lacticaseibacillus rhamnosus strains isolated from blood

Piotr Jarocki, Jan Sadurski, Martyna Siuda, Mateusz Romanowicz, Jacek Panek, Magdalena Frąc, Adam Waśko

published 31 Oct 2025

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Characterisation of the bacterial and archaeal microbiota in fresh colostrum collected from a single, spring-calving dairy herd

Sabine Scully, Bernadette Earley, Paul E. Smith, Matthew S. J. Finnie, Catherine McAloon, Frank Buckley, David A. Kenny, Sinéad M. Waters

published 30 Oct 2025

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Keystone active bacterial lineages associated with Penaeus stylirostris shrimp health across larvae stages

Nolwenn Callac, Nelly Wabete, Carolane Giraud, Valérie Perez, Dominique Ansquer, Jean-Sébastien Lam, Dominique Pham, Viviane Boulo

published 29 Oct 2025

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Whole genome sequence of multidrug-resistant Staphylococcus haemolyticus and Enterococcus faecalis isolates from public gymnasium equipment reveals evolving infection potential and resistance

Goutam Banerjee, Pratik Banerjee

published 29 Oct 2025

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Temporal establishment of the colon microbiota in Angus calves from birth to post-weaning

Michelle M. Stafford, Paul E. Smith, Sinead M. Waters, Frank Buckley, Steven McLoughlin, Stuart F. Kirwan, Eoin O’Hara, David A. Kenny

published 28 Oct 2025

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