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Microbial genomics

Florida Keys Cassiopea host benthos-like external microbiomes and a gut dominated by Vibrio, Endozoicomonas and Mycoplasma

Kaden M. Muffett, Jessica M. Labonté, Maria Pia Miglietta

published 12 Aug 2025

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In-depth insight into the short-term effect of floor management practice on young apple trees development and soil microbial biodiversity and activity

Ewa M. Furmanczyk, Eligio Malusà

published 07 Aug 2025

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The porphyran degradation system is complete, phylogenetically and geographically diverse across the gut microbiota of East Asian populations

Laure Ségurel, Thirumalai Selvi Ulaganathan, Sophie Mathieu, Mélanie Loiodice, Laurent Poulet, Sophie Drouillard, Miroslaw Cygler, William Helbert

published 01 Aug 2025

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OpDetect: A convolutional and recurrent neural network classifier for precise and sensitive operon detection from RNA-seq data

Rezvan Karaji, Lourdes Peña-Castillo

published 01 Aug 2025

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Decoding past microbial life and antibiotic resistance in İnonü Cave’s archaeological soil

Sukran Ozturk, F.Gülden Ekmen, Hamza Ekmen, Esra Mine Ünal, Ayşegül Er, Emre Keskin, Benjamin Stanley Arbuckle

published 31 Jul 2025

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Whole blood transcriptomics analysis of Indonesians reveals translocated and pathogenic microbiota in blood

Katalina Bobowik, Muhamad Fachrul, Chelzie Crenna Darusallam, Pradiptajati Kusuma, Herawati Sudoyo, Clarissa A. Febinia, Safarina G. Malik, Christine A. Wells, Irene Gallego Romero

published 24 Jul 2025

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Increased gut microbiota diversity in women with uterine fibroids: Insights from a pilot study on gut and reproductive tract microbiota

Lidia Korczyńska, Michalina Dąbrowska, Maria Kulecka, Piotr Olcha, Tomasz Łoziński, Maciej Brązert, Jerzy Ostrowski, Ewa E. Hennig, Michał Ciebiera, Natalia Zeber-Lubecka

published 24 Jul 2025

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Extensive novel diversity and phenotypic associations in the dromedary camel microbiome are revealed through deep metagenomics and machine learning

Fathi A. Mubaraki

published 17 Jul 2025

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Correlation between pre-extraction periodontal diagnosis and peri-implant microbiome for patients treated with implant-retained overdenture – A retrospective cohort pilot study

Xiaoxi Cui, Acela A. Martinez Luna, Alex Gillone, Qiang Wu, Mahmoud Serag, Ramiro Mendonca Murata

published 14 Jul 2025

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Social structuring of the gut microbiome in communally roosting bats

Eleonore Lebeuf-Taylor, Alexandria Cosby, Quinn Webber, Karl Cottenie

published 03 Jul 2025

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Comparative analysis of skin microbiome of patients with filarial lymphedema and healthy individuals

Sowmiya Manavalan, Devu Pradeep, Danapriyaa Dharmalingam, Janani Semalaiyappan, Thamizhpraba Sivarasan, Shakila Venkatesan, Sankari Thirumal, Vijesh Sreedhar Kuttiatt

published 02 Jul 2025

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Maternal gut microbiome interventions to improve maternal and perinatal health outcomes: Target product profile expert consensus and pipeline analysis

Kate Mills, Joelle Tan, Tahlia Guneratne, Lindsay Keir, Maya Goldstein, Cécile Ventola, Maureen Makama, Anne Ammerdorffer, A. Metin Gülmezoglu, Joshua P. Vogel, Annie R. A. McDougall

published 02 Jul 2025

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Whole genome-based reclassification of several species of the genus Nonomuraea

Noureddine Bouras, Imen Nouioui, Guendouz Dif, Fawzia Chaabane Chaouch, Sherif S. Ebada

published 01 Jul 2025

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