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Macromolecular structure analysis

GraphTransDTI: A novel hybrid framework combining graph transformer and CNN-BiLSTM for enhanced Drug-Protein Interaction prediction

Van-Vang Le, Mai Thi Anh Nhu, Pham Truong Viet Thong

Heptapharmacological activity of Quercetin-3-O-phosphate against lung cancer pathways

Maryam Abdulrahman Alahdal, Hadil Alahdal, [ ... ], Abeer Al Tuwaijri

DMS-informed secondary structure modeling of Epstein–Barr Virus LMP-1 pre-mRNA defines novel elements spanning introns

Taylor O. Eich, Evelyn C. Coppenbarger, Abdelraouf O. Dapour, Walter N. Moss

Design and evaluation of a novel fusion antigen for diagnosing human strongyloidiasis: An immunoinformatics approach

Marzieh Asadi, Sina Taghvimi, [ ... ], Amir Savardashtaki

Enhanced IGFL1 translation in response to IL-1β is controlled by distinct 3’UTR elements

Giulia Cardamone, Melanie Flohr, [ ... ], Tobias Schmid

Pan-genome and reverse vaccinology for a multi-epitope vaccine against circulating post-2022 Monkeypox virus strains

Md Al Saber, Md. Hasan Jafre Shovon, [ ... ], Md Nazmul Hasan

GARN3: A coarse-grained helix centered technique for RNA 3D structures prediction

Jhonatan Silva, Johanne Cohen, Daniel Cordeiro

Prediction of pre- and postfusion conformations of class I fusion proteins with AlphaFold2

Sevilay Gülesen, Victoria Most, Clara T. Schoeder, Jens Meiler

Structural bioinformatic studies of eight integral transmembrane NADPH oxidases and their AlphaFold 3 predicted QTY analogs with reduced hydrophobicity

Tutu Hu, Rick Cheng, Edward Chen, Shuguang Zhang

Predicting unknown binding sites for transition-metal-based compounds in proteins

Andrea Levy, Ursula Rothlisberger

Large-scale statistical dissection of sequence-derived biochemical features distinguishing soluble and insoluble proteins

Nguyen Huy Hoang Vu, Bao Long Nguyen

Solution structure of mouse HBS1L/SKI7-specific UBA domain in complex with ubiquitin: Implications for stalled ribosome recognition

Nobukazu Nameki, Fahu He, [ ... ], Kanako Kuwasako

Comparative unfolding of the Trp-cage miniprotein in anionic and cationic surfactants

Osita Sunday Nnyigide, Haewon Byeon, Uchenna Esther Okpete

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