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Heuristic alignment procedure

An efficient constructive heuristic for the rectangular packing problem with rotations

Xusheng Zhao, Yunqing Rao, Peng Qi, Qianhang Lyu, Piaoruo Yang, Shoubo Yu

published 28 Dec 2023

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On closing the inopportune gap with consistency transformation and iterative refinement

Mario João Jr., Alexandre C. Sena, Vinod E. F. Rebello

published 13 Jul 2023

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Breaking the bonds of reinforcement: Effects of trial outcome, rule consistency and rule complexity against exploitable and unexploitable opponents

Jukka Sundvall, Benjamin James Dyson

published 02 Feb 2022

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Non-sequential protein structure alignment by conformational space annealing and local refinement

InSuk Joung, Jong Yun Kim, Keehyoung Joo, Jooyoung Lee

published 30 Jan 2019

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Homology and linkage in crossover for linear genomes of variable length

Adriaan Merlevede, Henrik Åhl, Carl Troein

published 03 Jan 2019

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Two Simple and Efficient Algorithms to Compute the SP-Score Objective Function of a Multiple Sequence Alignment

Vincent Ranwez

published 09 Aug 2016

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Parallel and Scalable Short-Read Alignment on Multi-Core Clusters Using UPC++

Jorge González-Domínguez, Yongchao Liu, Bertil Schmidt

published 05 Jan 2016

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SW#db: GPU-Accelerated Exact Sequence Similarity Database Search

Matija Korpar, Martin Šošić, Dino Blažeka, Mile Šikić

published 31 Dec 2015

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Ontology Alignment Repair through Modularization and Confidence-Based Heuristics

Emanuel Santos, Daniel Faria, Catia Pesquita, Francisco M. Couto

published 28 Dec 2015

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CAB-Align: A Flexible Protein Structure Alignment Method Based on the Residue-Residue Contact Area

Genki Terashi, Mayuko Takeda-Shitaka

published 26 Oct 2015

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HIVE-Hexagon: High-Performance, Parallelized Sequence Alignment for Next-Generation Sequencing Data Analysis

Luis Santana-Quintero, Hayley Dingerdissen, Jean Thierry-Mieg, Raja Mazumder, Vahan Simonyan

published 11 Jun 2014

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MC64-ClustalWP2: A Highly-Parallel Hybrid Strategy to Align Multiple Sequences in Many-Core Architectures

David Díaz, Francisco J. Esteban, Pilar Hernández, Juan Antonio Caballero, Antonio Guevara, Gabriel Dorado, Sergio Gálvez

published 07 Apr 2014

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CUSHAW3: Sensitive and Accurate Base-Space and Color-Space Short-Read Alignment with Hybrid Seeding

Yongchao Liu, Bernt Popp, Bertil Schmidt

published 22 Jan 2014

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