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Genomic signal processing

OpDetect: A convolutional and recurrent neural network classifier for precise and sensitive operon detection from RNA-seq data

Rezvan Karaji, Lourdes Peña-Castillo

published 01 Aug 2025

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Optimized CUT&RUN protocol for activated primary mouse B cells

Stormy E. Ruiz, Robert W. Maul, Patricia J. Gearhart

published 24 Apr 2025

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A novel dual probe-based method for mutation detection using isothermal amplification

Nidhi Nandu, Michael Miller, Yanhong Tong, Zhi-xiang Lu

published 22 Oct 2024

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ARID1A loss is associated with increased NRF2 signaling in human head and neck squamous cell carcinomas

Vinh Nguyen, Travis P. Schrank, Michael B. Major, Bernard E. Weissman

published 15 Feb 2024

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Using deep LSD to build operators in GANs latent space with meaning in real space

J. Quetzalcóatl Toledo-Marín, James A. Glazier

published 29 Jun 2023

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A comprehensive performance analysis of sequence-based within-sample testing NIPT methods

Tom Mokveld, Zaid Al-Ars, Erik A. Sistermans, Marcel Reinders

published 14 Apr 2023

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Direct RNA sequencing of respiratory syncytial virus infected human cells generates a detailed overview of RSV polycistronic mRNA and transcript abundance

I’ah Donovan-Banfield, Rachel Milligan, Sophie Hall, Tianyi Gao, Eleanor Murphy, Jack Li, Ghada T. Shawli, Julian Hiscox, Xiaodong Zhuang, Jane A. McKeating, Rachel Fearns, David A. Matthews

published 10 Nov 2022

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Identifying signatures of natural selection in Indian populations

Marla Mendes, Manjari Jonnalagadda, Shantanu Ozarkar, Flávia Carolina Lima Torres, Victor Borda Pua, Christopher Kendall, Eduardo Tarazona-Santos, Esteban J. Parra

published 04 Aug 2022

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GenomeBits insight into omicron and delta variants of coronavirus pathogen

Enrique Canessa, Livio Tenze

published 11 Jul 2022

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Cytogenetic evidence supports Avena insularis being closely related to hexaploid oats

Araceli Fominaya, Yolanda Loarce, Juan M. González, Esther Ferrer

published 15 Oct 2021

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Signal-based optical map alignment

Mehmet Akdel, Henri van de Geest, Elio Schijlen, Irma M. H. van Rijswijck, Eddy J. Smid, Gabino Sanchez-Perez, Dick de Ridder

published 30 Sep 2021

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Observations of linear aggregation behavior in rotifers (Brachionus calyciflorus)

Shuang-Huai Cheng, Hai-Ying Zhang, Ming-Yue Zhu, Li Min Zhou, Guo-Hui Yi, Xiao-Wen He, Jin-Yan Wu, Jin-Lei Sui, Hua Wu, Shi-Jiao Yan, Yun-Xia Zhang, Chuan-Zhu Lv

published 19 Aug 2021

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Identification of novel and rare variants associated with handgrip strength using whole genome sequence data from the NHLBI Trans-Omics in Precision Medicine (TOPMed) Program

Chloé Sarnowski, Han Chen, Mary L. Biggs, Sylvia Wassertheil-Smoller, Jan Bressler, Marguerite R. Irvin, Kathleen A. Ryan, David Karasik, Donna K. Arnett, L. Adrienne Cupples, David W. Fardo, Stephanie M. Gogarten, Benjamin D. Heavner, Deepti Jain, Hyun Min Kang, Charles Kooperberg, Arch G. Mainous, Braxton D. Mitchell, Alanna C. Morrison, Jeffrey R. O’Connell, Bruce M. Psaty, Kenneth Rice, Albert V. Smith, Ramachandran S. Vasan, B. Gwen Windham, Douglas P. Kiel, Joanne M. Murabito, Kathryn L. Lunetta, on behalf of the TOPMed Longevity and Healthy Aging Working Group , from the NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium

published 02 Jul 2021

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