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Genomic libraries

A Microfluidic DNA Library Preparation Platform for Next-Generation Sequencing

Hanyoup Kim, Mais J. Jebrail, Anupama Sinha, Zachary W. Bent, Owen D. Solberg, Kelly P. Williams, Stanley A. Langevin, Ronald F. Renzi, James L. Van De Vreugde, Robert J. Meagher, Joseph S. Schoeniger, Todd W. Lane, Steven S. Branda, Michael S. Bartsch, Kamlesh D. Patel

published 22 Jul 2013

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Fine De Novo Sequencing of a Fungal Genome Using only SOLiD Short Read Data: Verification on Aspergillus oryzae RIB40

Myco Umemura, Yoshinori Koyama, Itaru Takeda, Hiroko Hagiwara, Tsutomu Ikegami, Hideaki Koike, Masayuki Machida

published 07 May 2013

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Microsatellites for Next-Generation Ecologists: A Post-Sequencing Bioinformatics Pipeline

Iria Fernandez-Silva, Jonathan Whitney, Benjamin Wainwright, Kimberly R. Andrews, Heather Ylitalo-Ward, Brian W. Bowen, Robert J. Toonen, Erica Goetze, Stephen A. Karl

published 12 Feb 2013

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Consequences of Normalizing Transcriptomic and Genomic Libraries of Plant Genomes Using a Duplex-Specific Nuclease and Tetramethylammonium Chloride

Marta Matvienko, Alexander Kozik, Lutz Froenicke, Dean Lavelle, Belinda Martineau, Bertrand Perroud, Richard Michelmore

published 08 Feb 2013

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HTS-PEG: A Method for High Throughput Sequencing of the Paired-Ends of Genomic Libraries

Sisi Zhou, Yonggui Fu, Jie Li, Lingyu He, Xingsheng Cai, Qingyu Yan, Xingqiang Rao, Shengfeng Huang, Guang Li, Yiquan Wang, Anlong Xu

published 20 Dec 2012

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FastUniq: A Fast De Novo Duplicates Removal Tool for Paired Short Reads

Haibin Xu, Xiang Luo, Jun Qian, Xiaohui Pang, Jingyuan Song, Guangrui Qian, Jinhui Chen, Shilin Chen

published 20 Dec 2012

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C911: A Bench-Level Control for Sequence Specific siRNA Off-Target Effects

Eugen Buehler, Yu-Chi Chen, Scott Martin

published 14 Dec 2012

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The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation

Konstantinos Mavromatis, Miriam L. Land, Thomas S. Brettin, Daniel J. Quest, Alex Copeland, Alicia Clum, Lynne Goodwin, Tanja Woyke, Alla Lapidus, Hans Peter Klenk, Robert W. Cottingham, Nikos C. Kyrpides

published 12 Dec 2012

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Exploring Pandora's Box: Potential and Pitfalls of Low Coverage Genome Surveys for Evolutionary Biology

Florian Leese, Philipp Brand, Andrey Rozenberg, Christoph Mayer, Shobhit Agrawal, Johannes Dambach, Lars Dietz, Jana S. Doemel, William P. Goodall-Copstake, Christoph Held, Jennifer A. Jackson, Kathrin P. Lampert, Katrin Linse, Jan N. Macher, Jennifer Nolzen, Michael J. Raupach, Nicole T. Rivera, Christoph D. Schubart, Sebastian Striewski, Ralph Tollrian, Chester J. Sands

published 21 Nov 2012

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Long Span DNA Paired-End-Tag (DNA-PET) Sequencing Strategy for the Interrogation of Genomic Structural Mutations and Fusion-Point-Guided Reconstruction of Amplicons

Fei Yao, Pramila N. Ariyaratne, Axel M. Hillmer, Wah Heng Lee, Guoliang Li, Audrey S. M. Teo, Xing Yi Woo, Zhenshui Zhang, Jieqi P. Chen, Wan Ting Poh, Kelson F. B. Zawack, Chee Seng Chan, See Ting Leong, Say Chuan Neo, Poh Sum D. Choi, Song Gao, Niranjan Nagarajan, Hervé Thoreau, Atif Shahab, Xiaoan Ruan, Valère Cacheux-Rataboul, Chia-Lin Wei, Guillaume Bourque, Wing-Kin Sung, Edison T. Liu, Yijun Ruan

published 28 Sep 2012

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Paired-End Sequencing of Long-Range DNA Fragments for De Novo Assembly of Large, Complex Mammalian Genomes by Direct Intra-Molecule Ligation

Asan, Chunyu Geng, Yan Chen, Kui Wu, Qingle Cai, Yu Wang, Yongshan Lang, Hongzhi Cao, Huangming Yang, Jian Wang, Xiuqing Zhang

published 27 Sep 2012

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SNP Discovery with EST and NextGen Sequencing in Switchgrass (Panicum virgatum L.)

Elhan S. Ersoz, Mark H. Wright, Jasmyn L. Pangilinan, Moira J. Sheehan, Christian Tobias, Michael D. Casler, Edward S. Buckler, Denise E. Costich

published 25 Sep 2012

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Selective Depletion of rRNA Enables Whole Transcriptome Profiling of Archival Fixed Tissue

John D. Morlan, Kunbin Qu, Dominick V. Sinicropi

published 10 Aug 2012

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