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Genomic libraries

Deep Investigation of Arabidopsis thaliana Junk DNA Reveals a Continuum between Repetitive Elements and Genomic Dark Matter

Florian Maumus, Hadi Quesneville

Genome-Scale Validation of Deep-Sequencing Libraries

Dominic Schmidt, Rory Stark, [ ... ], Duncan T. Odom

Exome Sequencing from Nanogram Amounts of Starting DNA: Comparing Three Approaches

Vera N. Rykalina, Alexey A. Shadrin, [ ... ], Tatiana A. Borodina

Genome-Wide High-Throughput Screening to Investigate Essential Genes Involved in Methicillin-Resistant Staphylococcus aureus Sequence Type 398 Survival

Mette T. Christiansen, Rolf S. Kaas, [ ... ], Frank M. Aarestrup

Exploring Pandora's Box: Potential and Pitfalls of Low Coverage Genome Surveys for Evolutionary Biology

Florian Leese, Philipp Brand, [ ... ], Chester J. Sands

The Long March: A Sample Preparation Technique that Enhances Contig Length and Coverage by High-Throughput Short-Read Sequencing

Katherine Sorber, Charles Chiu, [ ... ], Joseph L. DeRisi

Imputation accuracy of wheat genotyping-by-sequencing (GBS) data using barley and wheat genome references

Hadi Alipour, Guihua Bai, [ ... ], Seyed Ali Peyghambari

Oligonucleotide Sequence Motifs as Nucleosome Positioning Signals

Clayton K. Collings, Alfonso G. Fernandez, [ ... ], John N. Anderson

Parallel Mapping of Antibiotic Resistance Alleles in Escherichia coli

Sophie J. Weiss, Thomas J. Mansell, [ ... ], Ryan T. Gill

Evaluating coverage bias in next-generation sequencing of Escherichia coli

Samantha Gunasekera, Sam Abraham, [ ... ], Mark O’Dea

How “simple” methodological decisions affect interpretation of population structure based on reduced representation library DNA sequencing: A case study using the lake whitefish

Carly F. Graham, Douglas R. Boreham, [ ... ], Christopher M. Somers

GPU-BSM: A GPU-Based Tool to Map Bisulfite-Treated Reads

Andrea Manconi, Alessandro Orro, [ ... ], Luciano Milanesi

DNApi: A De Novo Adapter Prediction Algorithm for Small RNA Sequencing Data

Junko Tsuji, Zhiping Weng

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