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Genomic libraries

Identification of transposable elements and satellite DNA in the Neotropical species Drosophila amaguana from the Ecuadorian Andean Forests

Manuel Alejandro Coba-Males, Simon Orozco-Arias, Romain Guyot, Doris Vela

published 10 Dec 2025

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FM3VCF: A software library for accelerating the loading of large VCF files in genotype data analyses

Zhen Zuo, Mingliang Li, Qi Li, Zhuo Li, Defu Liu, Guanshi Ye, You Tang

published 04 Jun 2025

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Optimized conditions for Listeria, Salmonella and Escherichia whole genome sequencing using the Illumina iSeq100 platform with point-and-click bioinformatic analysis

Sonsiray Alvarez Narvaez, Zhenyu Shen, Lifang Yan, Brianna L. S. Stenger, Laura B. Goodman, Ailam Lim, Ruth H. Nissly, Meera Surendran Nair, Shuping Zhang, Susan Sanchez

published 30 Nov 2022

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Proximal-end bias from in-vitro reconstituted nucleosomes and the result on downstream data analysis

David A. Bates, Charles E. Bates, Andrew S. Earl, Colin Skousen, Ashley N. Fetbrandt, Jordon Ritchie, Paul M. Bodily, Steven M. Johnson

published 21 Oct 2021

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Evaluating coverage bias in next-generation sequencing of Escherichia coli

Samantha Gunasekera, Sam Abraham, Marc Stegger, Stanley Pang, Penghao Wang, Shafi Sahibzada, Mark O’Dea

published 24 Jun 2021

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Genomic and cDNA selection-amplification identifies transcriptome-wide binding sites for the Drosophila protein sex-lethal

Hiren Banerjee, Ravinder Singh

published 24 May 2021

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Choice of library preparation affects sequence quality, genome assembly, and precise in silico prediction of virulence genes in shiga toxin-producing Escherichia coli

Julie Haendiges, Karen Jinneman, Narjol Gonzalez-Escalona

published 24 Mar 2021

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Evaluating the number of different genomes in a metagenome by means of the compositional spectra approach

Valery Kirzhner, Dvora Toledano-Kitai, Zeev Volkovich

published 06 Nov 2020

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Non-invasive prenatal testing (NIPT) by low coverage genomic sequencing: Detection limits of screened chromosomal microdeletions

Marcel Kucharik, Andrej Gnip, Michaela Hyblova, Jaroslav Budis, Lucia Strieskova, Maria Harsanyova, Ondrej Pös, Zuzana Kubiritova, Jan Radvanszky, Gabriel Minarik, Tomas Szemes

published 26 Aug 2020

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How “simple” methodological decisions affect interpretation of population structure based on reduced representation library DNA sequencing: A case study using the lake whitefish

Carly F. Graham, Douglas R. Boreham, Richard G. Manzon, Wendylee Stott, Joanna Y. Wilson, Christopher M. Somers

published 24 Jan 2020

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Immunocapture of virions with virus-specific antibodies prior to high-throughput sequencing effectively enriches for virus-specific sequences

Dennis Knierim, Wulf Menzel, Stephan Winter

published 09 May 2019

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Imputation accuracy of wheat genotyping-by-sequencing (GBS) data using barley and wheat genome references

Hadi Alipour, Guihua Bai, Guorong Zhang, Mohammad Reza Bihamta, Valiollah Mohammadi, Seyed Ali Peyghambari

published 07 Jan 2019

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Chinook salmon (Oncorhynchus tshawytscha) genome and transcriptome

Kris A. Christensen, Jong S. Leong, Dionne Sakhrani, Carlo A. Biagi, David R. Minkley, Ruth E. Withler, Eric B. Rondeau, Ben F. Koop, Robert H. Devlin

published 05 Apr 2018

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