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Genomic databases

Whole exome sequencing in thrombophilic pedigrees to identify genetic risk factors for venous thromboembolism

Marisa L. R. Cunha, Joost C. M. Meijers, [ ... ], Saskia Middeldorp

Pea Marker Database (PMD) – A new online database combining known pea (Pisum sativum L.) gene-based markers

Olga A. Kulaeva, Aleksandr I. Zhernakov, [ ... ], Vladimir A. Zhukov

Rare and common variants of APOB and PCSK9 in Korean patients with extremely low low-density lipoprotein-cholesterol levels

Chan Joo Lee, Yunbeom Lee, [ ... ], Sang-Hak Lee

BrEPS 2.0: Optimization of sequence pattern prediction for enzyme annotation

Christian-Alexander Dudek, Henning Dannheim, Dietmar Schomburg

The effects of sampling on the efficiency and accuracy of k−mer indexes: Theoretical and empirical comparisons using the human genome

Meznah Almutairy, Eric Torng

Dr.seq2: A quality control and analysis pipeline for parallel single cell transcriptome and epigenome data

Chengchen Zhao, Sheng’en Hu, Xiao Huo, Yong Zhang

PpTFDB: A pigeonpea transcription factor database for exploring functional genomics in legumes

Akshay Singh, Ajay Kumar Sharma, Nagendra Kumar Singh, Tilak Raj Sharma

Bioinformatic training needs at a health sciences campus

Jeffrey C. Oliver

De novo transcriptomic analysis and development of EST-SSRs for Sorbus pohuashanensis (Hance) Hedl.

Congcong Liu, Ying Dou, [ ... ], Wei Li

A genome-scale metabolic reconstruction of Lysinibacillus sphaericus unveils unexploited biotechnological potentials

Camilo Gómez-Garzón, Alejandra Hernández-Santana, Jenny Dussán

EnHERV: Enrichment analysis of specific human endogenous retrovirus patterns and their neighboring genes

Pumipat Tongyoo, Yingyos Avihingsanon, [ ... ], Nattiya Hirankarn

MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads

Thomas Nordahl Petersen, Oksana Lukjancenko, [ ... ], Thomas Sicheritz-Pontén

SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata

Benjamin C. Hitz, Laurence D. Rowe, [ ... ], J. Michael Cherry

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