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Genomic databases

Advanced biofilm analysis in streams receiving organic deicer runoff

Michelle A. Nott, Heather E. Driscoll, Minoru Takeda, Mahesh Vangala, Steven R. Corsi, Scott W. Tighe

published 22 Jan 2020

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Characterization of the diverse plasmid pool harbored by the bla_NDM-1-containing Acinetobacter bereziniae HPC229 clinical strain

Marco Brovedan, Guillermo D. Repizo, Patricia Marchiaro, Alejandro M. Viale, Adriana Limansky

published 19 Nov 2019

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ProphET, prophage estimation tool: A stand-alone prophage sequence prediction tool with self-updating reference database

João L. Reis-Cunha, Daniella C. Bartholomeu, Abigail L. Manson, Ashlee M. Earl, Gustavo C. Cerqueira

published 02 Oct 2019

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Genomic characterisation of perinatal Western Australian Streptococcus agalactiae isolates

Lucy L. Furfaro, Barbara J. Chang, Charlene M. Kahler, Matthew S. Payne

published 02 Oct 2019

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Phylogenetic microbiota profiling in fecal samples depends on combination of sequencing depth and choice of NGS analysis method

Sukithar K. Rajan, Mårten Lindqvist, Robert Jan Brummer, Ida Schoultz, Dirk Repsilber

published 17 Sep 2019

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Control of human testis-specific gene expression

Jay C. Brown

published 12 Sep 2019

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VarWatch—A stand-alone software tool for variant matching

Broder Fredrich, Marcus Schmöhl, Olaf Junge, Sven Gundlach, David Ellinghaus, Arne Pfeufer, Thomas Bettecken, Roman Siddiqui, Andre Franke, Thomas F. Wienker, Marc P. Hoeppner, Michael Krawczak

published 25 Apr 2019

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Integration of heterogeneous functional genomics data in gerontology research to find genes and pathway underlying aging across species

Jason A. Bubier, George L. Sutphin, Timothy J. Reynolds, Ron Korstanje, Axis Fuksman-Kumpa, Erich J. Baker, Michael A. Langston, Elissa J. Chesler

published 12 Apr 2019

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GenomeGraphR: A user-friendly open-source web application for foodborne pathogen whole genome sequencing data integration, analysis, and visualization

Moez Sanaa, Régis Pouillot, Francisco Garcés Vega, Errol Strain, Jane M. Van Doren

published 28 Feb 2019

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HuVarBase: A human variant database with comprehensive information at gene and protein levels

Kaliappan Ganesan, A. Kulandaisamy, S. Binny Priya, M. Michael Gromiha

published 31 Jan 2019

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Proteotyping bacteria: Characterization, differentiation and identification of pneumococcus and other species within the Mitis Group of the genus Streptococcus by tandem mass spectrometry proteomics

Roger Karlsson, Lucia Gonzales-Siles, Margarita Gomila, Antonio Busquets, Francisco Salvà-Serra, Daniel Jaén-Luchoro, Hedvig E. Jakobsson, Anders Karlsson, Fredrik Boulund, Erik Kristiansson, Edward R. B. Moore

published 10 Dec 2018

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An improved DNA array-based classification method for the identification of Salmonella serotypes shows high concordance between traditional and genotypic testing

James Robertson, Catherine Yoshida, Simone Gurnik, Madison McGrogan, Kristin Davis, Gitanjali Arya, Stephanie A. Murphy, Anil Nichani, John H. E. Nash

published 04 Dec 2018

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An open-source k-mer based machine learning tool for fast and accurate subtyping of HIV-1 genomes

Stephen Solis-Reyes, Mariano Avino, Art Poon, Lila Kari

published 14 Nov 2018

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