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Genomic databases

Isolation of a novel species in the genus Cupriavidus from a patient with sepsis using whole genome sequencing

Oh Joo Kweon, Yong Kwan Lim, Hye Ryoun Kim, Tae-Hyoung Kim, Sung-min Ha, Mi-Kyung Lee

published 13 May 2020

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Weirdo19ES is a novel singleton mycobacteriophage that selects for glycolipid deficient phage-resistant M. smegmatis mutants

Cristian Alejandro Suarez, Jorgelina Judith Franceschelli, Sabrina Emilse Tasselli, Héctor Ricardo Morbidoni

published 01 May 2020

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Advancing clinical cohort selection with genomics analysis on a distributed platform

Jaclyn M. Smith, Melvin Lathara, Hollis Wright, Brian Hill, Nalini Ganapati, Ganapati Srinivasa, Christopher T. Denny

published 23 Apr 2020

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Identification of a novel archaea virus, detected in hydrocarbon polluted Hungarian and Canadian samples

János Molnár, Balázs Magyar, György Schneider, Krisztián Laczi, Sarshad K. Valappil, Árpád L. Kovács, Ildikó K. Nagy, Gábor Rákhely, Tamás Kovács

published 17 Apr 2020

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Identification of NUDT15 gene variants in Amazonian Amerindians and admixed individuals from northern Brazil

Juliana Carla Gomes Rodrigues, Tatiane Piedade de Souza, Lucas Favacho Pastana, André Maurício Ribeiro dos Santos, Marianne Rodrigues Fernandes, Pablo Pinto, Alayde Vieira Wanderley, Sandro José de Souza, José Eduardo Kroll, Adenilson Leão Pereira, Leandro Magalhães, Laís Reis das Mercês, Amanda Ferreira Vidal, Tatiana Vinasco-Sandoval, Giovanna Chaves Cavalcante, João Farias Guerreiro, Paulo Pimentel de Assumpção, Ândrea Ribeiro-dos-Santos, Sidney Santos, Ney Pereira Carneiro dos Santos

published 15 Apr 2020

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A restriction enzyme reduced representation sequencing approach for low-cost, high-throughput metagenome profiling

Melanie K. Hess, Suzanne J. Rowe, Tracey C. Van Stijn, Hannah M. Henry, Sharon M. Hickey, Rudiger Brauning, Alan F. McCulloch, Andrew S. Hess, Michelle R. Kirk, Sandeep Kumar, Cesar Pinares-Patiño, Sandra Kittelmann, Graham R. Wood, Peter H. Janssen, John C. McEwan

published 03 Apr 2020

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Evolving public views on the value of one’s DNA and expectations for genomic database governance: Results from a national survey

Forrest Briscoe, Ifeoma Ajunwa, Allison Gaddis, Jennifer McCormick

published 11 Mar 2020

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All of gene expression (AOE): An integrated index for public gene expression databases

Hidemasa Bono

published 24 Jan 2020

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Advanced biofilm analysis in streams receiving organic deicer runoff

Michelle A. Nott, Heather E. Driscoll, Minoru Takeda, Mahesh Vangala, Steven R. Corsi, Scott W. Tighe

published 22 Jan 2020

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Characterization of the diverse plasmid pool harbored by the bla_NDM-1-containing Acinetobacter bereziniae HPC229 clinical strain

Marco Brovedan, Guillermo D. Repizo, Patricia Marchiaro, Alejandro M. Viale, Adriana Limansky

published 19 Nov 2019

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ProphET, prophage estimation tool: A stand-alone prophage sequence prediction tool with self-updating reference database

João L. Reis-Cunha, Daniella C. Bartholomeu, Abigail L. Manson, Ashlee M. Earl, Gustavo C. Cerqueira

published 02 Oct 2019

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Genomic characterisation of perinatal Western Australian Streptococcus agalactiae isolates

Lucy L. Furfaro, Barbara J. Chang, Charlene M. Kahler, Matthew S. Payne

published 02 Oct 2019

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Phylogenetic microbiota profiling in fecal samples depends on combination of sequencing depth and choice of NGS analysis method

Sukithar K. Rajan, Mårten Lindqvist, Robert Jan Brummer, Ida Schoultz, Dirk Repsilber

published 17 Sep 2019

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