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Genomic databases

Sizing the Problem of Improving Discovery and Access to NIH-Funded Data: A Preliminary Study

Kevin B. Read, Jerry R. Sheehan, [ ... ], NIH Big Data Annotator Group

An open-source k-mer based machine learning tool for fast and accurate subtyping of HIV-1 genomes

Stephen Solis-Reyes, Mariano Avino, Art Poon, Lila Kari

NeSSM: A Next-Generation Sequencing Simulator for Metagenomics

Ben Jia, Liming Xuan, [ ... ], Chaochun Wei

Database Citation in Full Text Biomedical Articles

Şenay Kafkas, Jee-Hyub Kim, Johanna R. McEntyre

All of gene expression (AOE): An integrated index for public gene expression databases

Hidemasa Bono

MetaPhinder—Identifying Bacteriophage Sequences in Metagenomic Data Sets

Vanessa Isabell Jurtz, Julia Villarroel, [ ... ], Morten Nielsen

Search Engine for Antimicrobial Resistance: A Cloud Compatible Pipeline and Web Interface for Rapidly Detecting Antimicrobial Resistance Genes Directly from Sequence Data

Will Rowe, Kate S. Baker, [ ... ], Gareth Pearce

Transcriptome Sequencing and Expression Analysis of Terpenoid Biosynthesis Genes in Litsea cubeba

Xiao-Jiao Han, Yang-Dong Wang, [ ... ], Qing-Ke Wu

Structural and Functional Insights from the Metagenome of an Acidic Hot Spring Microbial Planktonic Community in the Colombian Andes

Diego Javier Jiménez, Fernando Dini Andreote, [ ... ], Sandra Baena

Fast and Accurate Taxonomic Assignments of Metagenomic Sequences Using MetaBin

Vineet K. Sharma, Naveen Kumar, Tulika Prakash, Todd D. Taylor

ProphET, prophage estimation tool: A stand-alone prophage sequence prediction tool with self-updating reference database

João L. Reis-Cunha, Daniella C. Bartholomeu, [ ... ], Gustavo C. Cerqueira

Large scale genomic analysis of 3067 SARS-CoV-2 genomes reveals a clonal geo-distribution and a rich genetic variations of hotspots mutations

Meriem Laamarti, Tarek Alouane, [ ... ], Azeddine Ibrahimi

Transcriptome Analysis of the Silkworm (Bombyx mori) by High-Throughput RNA Sequencing

Yinü Li, Guozeng Wang, [ ... ], Zhifang Zhang

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