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Genomic databases

pubmed2ensembl: A Resource for Mining the Biological Literature on Genes

Joachim Baran, Martin Gerner, [ ... ], Casey M. Bergman

An open-source k-mer based machine learning tool for fast and accurate subtyping of HIV-1 genomes

Stephen Solis-Reyes, Mariano Avino, Art Poon, Lila Kari

NeSSM: A Next-Generation Sequencing Simulator for Metagenomics

Ben Jia, Liming Xuan, [ ... ], Chaochun Wei

Database Citation in Full Text Biomedical Articles

Şenay Kafkas, Jee-Hyub Kim, Johanna R. McEntyre

MetaPhinder—Identifying Bacteriophage Sequences in Metagenomic Data Sets

Vanessa Isabell Jurtz, Julia Villarroel, [ ... ], Morten Nielsen

All of gene expression (AOE): An integrated index for public gene expression databases

Hidemasa Bono

Search Engine for Antimicrobial Resistance: A Cloud Compatible Pipeline and Web Interface for Rapidly Detecting Antimicrobial Resistance Genes Directly from Sequence Data

Will Rowe, Kate S. Baker, [ ... ], Gareth Pearce

Fast and Accurate Taxonomic Assignments of Metagenomic Sequences Using MetaBin

Vineet K. Sharma, Naveen Kumar, Tulika Prakash, Todd D. Taylor

Structural and Functional Insights from the Metagenome of an Acidic Hot Spring Microbial Planktonic Community in the Colombian Andes

Diego Javier Jiménez, Fernando Dini Andreote, [ ... ], Sandra Baena

Transcriptome Sequencing and Expression Analysis of Terpenoid Biosynthesis Genes in Litsea cubeba

Xiao-Jiao Han, Yang-Dong Wang, [ ... ], Qing-Ke Wu

ProphET, prophage estimation tool: A stand-alone prophage sequence prediction tool with self-updating reference database

João L. Reis-Cunha, Daniella C. Bartholomeu, [ ... ], Gustavo C. Cerqueira

Construction of a Phylogenetic Tree of Photosynthetic Prokaryotes Based on Average Similarities of Whole Genome Sequences

Soichirou Satoh, Mamoru Mimuro, Ayumi Tanaka

Large scale genomic analysis of 3067 SARS-CoV-2 genomes reveals a clonal geo-distribution and a rich genetic variations of hotspots mutations

Meriem Laamarti, Tarek Alouane, [ ... ], Azeddine Ibrahimi

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