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Genomic databases

A machine learning-based typing scheme refinement for Listeria monocytogenes core genome multilocus sequence typing with high discriminatory power for common source outbreak tracking

Yen-Yi Liu, Chih-Chieh Chen

published 19 Nov 2021

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Whole genome sequencing and characteristics of Escherichia coli with co-existence of ESBL and mcr genes from pigs

Suthathip Trongjit, Rungtip Chuanchuen

published 16 Nov 2021

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CicerSpTEdb: A web-based database for high-resolution genome-wide identification of transposable elements in Cicer species

Morad M. Mokhtar, Alsamman M. Alsamman, Haytham M. Abd-Elhalim, Achraf El Allali

published 11 Nov 2021

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Large-scale k-mer-based analysis of the informational properties of genomes, comparative genomics and taxonomy

Yuval Bussi, Ruti Kapon, Ziv Reich

published 14 Oct 2021

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Alpha-mannosidosis in Tunisian consanguineous families: Potential involvement of variants in GHR and SLC19A3 genes in the variable expressivity of cognitive impairment

Rahma Mkaouar, Zied Riahi, Cherine Charfeddine, Imen Chelly, Hela Boudabbous, Hamza Dallali, Crystel Bonnet, Meriem Hechmi, Soumeya Bekri, Nadia Zitouna, Lotfi Zekri, Amel Tounsi, Rym Kefi, Jihene Marrakchi, Olfa Messaoud, Ichraf Kraoua, Sonia Maalej, Ilhem Turki Ben Youssef, Ahlem Ben Hmid, Fabrice Giraudet, Sami Bouchoucha, Neji Tebib, Ghazi Besbes, Christine Petit, Ridha Mrad, Sonia Abdelhak, Mediha Trabelsi

published 06 Oct 2021

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Prognosis of recurrent bacterial vaginosis based on longitudinal changes in abundance of Lactobacillus and specific species of Gardnerella

Essence Turner, Jack D. Sobel, Robert A. Akins

published 23 Aug 2021

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Screening and identification of key biomarkers of papillary renal cell carcinoma by bioinformatic analysis

Yingying Xu, Deyang Kong, Zhongtang Li, Lingling Qian, Junchao Li, Chunbo Zou

published 06 Aug 2021

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DNAH11 compound heterozygous variants cause heterotaxy and congenital heart disease

Hong Xia, Xiangjun Huang, Sheng Deng, Hongbo Xu, Yan Yang, Xin Liu, Lamei Yuan, Hao Deng

published 16 Jun 2021

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PAN2HGENE–tool for comparative analysis and identifying new gene products

Mônica Silva de Oliveira, Jorianne Thyeska Castro Alves, Pablo Henrique Caracciolo Gomes de Sá, Adonney Allan de Oliveira Veras

published 28 May 2021

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Position preference of essential genes in prokaryotic operons

Tao Liu, Hao Luo, Feng Gao

published 22 Apr 2021

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iBLAST: Incremental BLAST of new sequences via automated e-value correction

Sajal Dash, Sarthok Rasique Rahman, Heather M. Hines, Wu-chun Feng

published 22 Apr 2021

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Supervised extraction of near-complete genomes from metagenomic samples: A new service in PATRIC

Bruce Parrello, Rory Butler, Philippe Chlenski, Gordon D. Pusch, Ross Overbeek

published 15 Apr 2021

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Significant variants of type 2 diabetes in the Arabian Region through an Integration of exome databases

Kosuke Goto, Katsuhiko Mineta, Satoru Miyazaki, Takashi Gojobori

published 13 Apr 2021

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