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Genomic databases

Evaluation of Three Automated Genome Annotations for Halorhabdus utahensis

Peter Bakke, Nick Carney, Will DeLoache, Mary Gearing, Kjeld Ingvorsen, Matt Lotz, Jay McNair, Pallavi Penumetcha, Samantha Simpson, Laura Voss, Max Win, Laurie J. Heyer, A. Malcolm Campbell

published 20 Jul 2009

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How Large Is the Metabolome? A Critical Analysis of Data Exchange Practices in Chemistry

Tobias Kind, Martin Scholz, Oliver Fiehn

published 05 May 2009

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smyRNA: A Novel Ab Initio ncRNA Gene Finder

Raheleh Salari, Cagri Aksay, Emre Karakoc, Peter J. Unrau, Iman Hajirasouliha, S. Cenk Sahinalp

published 05 May 2009

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dndDB: A Database Focused on Phosphorothioation of the DNA Backbone

Hong-Yu Ou, Xinyi He, Yucheng Shao, Cui Tai, Kumar Rajakumar, Zixin Deng

published 09 Apr 2009

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High-Throughput Proteomics Detection of Novel Splice Isoforms in Human Platelets

Karen A. Power, James P. McRedmond, Andreas de Stefani, William M. Gallagher, Peadar Ó Gaora

published 24 Mar 2009

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Cataloging Coding Sequence Variations in Human Genome Databases

Hong-Hee Won, Hee-Jin Kim, Kyung-A Lee, Jong-Won Kim

published 30 Oct 2008

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MiR-433 and miR-127 Arise from Independent Overlapping Primary Transcripts Encoded by the miR-433-127 Locus

Guisheng Song, Li Wang

published 30 Oct 2008

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MetaSim—A Sequencing Simulator for Genomics and Metagenomics

Daniel C. Richter, Felix Ott, Alexander F. Auch, Ramona Schmid, Daniel H. Huson

published 08 Oct 2008

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Dual Targeted Mitochondrial Proteins Are Characterized by Lower MTS Parameters and Total Net Charge

Maya Dinur-Mills, Merav Tal, Ophry Pines

published 14 May 2008

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Comparative Bacterial Proteomics: Analysis of the Core Genome Concept

Stephen J. Callister, Lee Ann McCue, Joshua E. Turse, Matthew E. Monroe, Kenneth J. Auberry, Richard D. Smith, Joshua N. Adkins, Mary S. Lipton

published 06 Feb 2008

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Chasing Migration Genes: A Brain Expressed Sequence Tag Resource for Summer and Migratory Monarch Butterflies (Danaus plexippus)

Haisun Zhu, Amy Casselman, Steven M. Reppert

published 09 Jan 2008

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An Intronic Signal for Alternative Splicing in the Human Genome

Necat Havlioglu, Jun Wang, Kazuo Fushimi, Maria D. Vibranovski, Zhengyan Kan, Warren Gish, Alexei Fedorov, Manyuan Long, Jane Y. Wu

published 28 Nov 2007

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The Princeton Protein Orthology Database (P-POD): A Comparative Genomics Analysis Tool for Biologists

Sven Heinicke, Michael S. Livstone, Charles Lu, Rose Oughtred, Fan Kang, Samuel V. Angiuoli, Owen White, David Botstein, Kara Dolinski

published 22 Aug 2007

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