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Genomic databases

HMMerThread: Detecting Remote, Functional Conserved Domains in Entire Genomes by Combining Relaxed Sequence-Database Searches with Fold Recognition

Charles Richard Bradshaw, Vineeth Surendranath, [ ... ], Bianca Hermine Habermann

Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets

Robert Schmieder, Robert Edwards

AGeS: A Software System for Microbial Genome Sequence Annotation

Kamal Kumar, Valmik Desai, [ ... ], Jaques Reifman

Abundant Human DNA Contamination Identified in Non-Primate Genome Databases

Mark S. Longo, Michael J. O'Neill, Rachel J. O'Neill

Novel Analysis of Oceanic Surface Water Metagenomes Suggests Importance of Polyphosphate Metabolism in Oligotrophic Environments

Ben Temperton, Jack A. Gilbert, John P. Quinn, John W. McGrath

Sequencing and Bioinformatics-Based Analyses of the microRNA Transcriptome in Hepatitis B–Related Hepatocellular Carcinoma

Yoshiaki Mizuguchi, Takuya Mishima, [ ... ], Toshihiro Takizawa

An FPT Approach for Predicting Protein Localization from Yeast Genomic Data

Jin Wang, Chunhe Li, Erkang Wang, Xidi Wang

The Effect of Algorithms on Copy Number Variant Detection

Debby W. Tsuang, Steven P. Millard, [ ... ], Chang-En Yu

Laboratory Mouse Models for the Human Genome-Wide Associations

Georgios D. Kitsios, Navdeep Tangri, Peter J. Castaldi, John P. A. Ioannidis

Expression of Conjoined Genes: Another Mechanism for Gene Regulation in Eukaryotes

Tulika Prakash, Vineet K. Sharma, [ ... ], Todd D. Taylor

Genome-Wide Data-Mining of Candidate Human Splice Translational Efficiency Polymorphisms (STEPs) and an Online Database

Christopher A. Raistrick, Ian N. M. Day, Tom R. Gaunt

Identification of cis-Regulatory Elements in the Mammalian Genome: The cREMaG Database

Marcin Piechota, Michal Korostynski, Ryszard Przewlocki

Examination of Apoptosis Signaling in Pancreatic Cancer by Computational Signal Transduction Analysis

Felix Rückert, Gihan Dawelbait, [ ... ], Robert Grützmann

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