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Genomic databases

Insights on the Evolution of Prolyl 3-Hydroxylation Sites from Comparative Analysis of Chicken and Xenopus Fibrillar Collagens

David M. Hudson, MaryAnn Weis, David R. Eyre

Copy Number Variants in Patients with Severe Oligozoospermia and Sertoli-Cell-Only Syndrome

Frank Tüttelmann, Manuela Simoni, [ ... ], Albrecht Röpke

A Bioinformatics Classifier and Database for Heme-Copper Oxygen Reductases

Filipa L. Sousa, Renato J. Alves, [ ... ], Manuela M. Pereira

Transcriptome Analysis of the Desert Locust Central Nervous System: Production and Annotation of a Schistocerca gregaria EST Database

Liesbeth Badisco, Jurgen Huybrechts, [ ... ], Jozef Vanden Broeck

Assembling a Protein-Protein Interaction Map of the SSU Processome from Existing Datasets

Young H. Lim, J. Michael Charette, Susan J. Baserga

HMMerThread: Detecting Remote, Functional Conserved Domains in Entire Genomes by Combining Relaxed Sequence-Database Searches with Fold Recognition

Charles Richard Bradshaw, Vineeth Surendranath, [ ... ], Bianca Hermine Habermann

Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets

Robert Schmieder, Robert Edwards

AGeS: A Software System for Microbial Genome Sequence Annotation

Kamal Kumar, Valmik Desai, [ ... ], Jaques Reifman

Abundant Human DNA Contamination Identified in Non-Primate Genome Databases

Mark S. Longo, Michael J. O'Neill, Rachel J. O'Neill

Novel Analysis of Oceanic Surface Water Metagenomes Suggests Importance of Polyphosphate Metabolism in Oligotrophic Environments

Ben Temperton, Jack A. Gilbert, John P. Quinn, John W. McGrath

Sequencing and Bioinformatics-Based Analyses of the microRNA Transcriptome in Hepatitis B–Related Hepatocellular Carcinoma

Yoshiaki Mizuguchi, Takuya Mishima, [ ... ], Toshihiro Takizawa

An FPT Approach for Predicting Protein Localization from Yeast Genomic Data

Jin Wang, Chunhe Li, Erkang Wang, Xidi Wang

The Effect of Algorithms on Copy Number Variant Detection

Debby W. Tsuang, Steven P. Millard, [ ... ], Chang-En Yu

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