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Genomic databases

HMMerThread: Detecting Remote, Functional Conserved Domains in Entire Genomes by Combining Relaxed Sequence-Database Searches with Fold Recognition

Charles Richard Bradshaw, Vineeth Surendranath, Robert Henschel, Matthias Stefan Mueller, Bianca Hermine Habermann

published 10 Mar 2011

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Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets

Robert Schmieder, Robert Edwards

published 09 Mar 2011

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AGeS: A Software System for Microbial Genome Sequence Annotation

Kamal Kumar, Valmik Desai, Li Cheng, Maxim Khitrov, Deepak Grover, Ravi Vijaya Satya, Chenggang Yu, Nela Zavaljevski, Jaques Reifman

published 07 Mar 2011

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Abundant Human DNA Contamination Identified in Non-Primate Genome Databases

Mark S. Longo, Michael J. O'Neill, Rachel J. O'Neill

published 16 Feb 2011

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Novel Analysis of Oceanic Surface Water Metagenomes Suggests Importance of Polyphosphate Metabolism in Oligotrophic Environments

Ben Temperton, Jack A. Gilbert, John P. Quinn, John W. McGrath

published 28 Jan 2011

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Sequencing and Bioinformatics-Based Analyses of the microRNA Transcriptome in Hepatitis B–Related Hepatocellular Carcinoma

Yoshiaki Mizuguchi, Takuya Mishima, Shigeki Yokomuro, Yasuo Arima, Yutaka Kawahigashi, Kengo Shigehara, Tomohiro Kanda, Hiroshi Yoshida, Eiji Uchida, Takashi Tajiri, Toshihiro Takizawa

published 25 Jan 2011

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An FPT Approach for Predicting Protein Localization from Yeast Genomic Data

Jin Wang, Chunhe Li, Erkang Wang, Xidi Wang

published 19 Jan 2011

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The Effect of Algorithms on Copy Number Variant Detection

Debby W. Tsuang, Steven P. Millard, Benjamin Ely, Peter Chi, Kenneth Wang, Wendy H. Raskind, Sulgi Kim, Zoran Brkanac, Chang-En Yu

published 30 Dec 2010

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Laboratory Mouse Models for the Human Genome-Wide Associations

Georgios D. Kitsios, Navdeep Tangri, Peter J. Castaldi, John P. A. Ioannidis

published 01 Nov 2010

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Expression of Conjoined Genes: Another Mechanism for Gene Regulation in Eukaryotes

Tulika Prakash, Vineet K. Sharma, Naoki Adati, Ritsuko Ozawa, Naveen Kumar, Yuichiro Nishida, Takayoshi Fujikake, Tadayuki Takeda, Todd D. Taylor

published 12 Oct 2010

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Genome-Wide Data-Mining of Candidate Human Splice Translational Efficiency Polymorphisms (STEPs) and an Online Database

Christopher A. Raistrick, Ian N. M. Day, Tom R. Gaunt

published 11 Oct 2010

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Identification of cis-Regulatory Elements in the Mammalian Genome: The cREMaG Database

Marcin Piechota, Michal Korostynski, Ryszard Przewlocki

published 31 Aug 2010

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Examination of Apoptosis Signaling in Pancreatic Cancer by Computational Signal Transduction Analysis

Felix Rückert, Gihan Dawelbait, Christof Winter, Arndt Hartmann, Axel Denz, Ole Ammerpohl, Michael Schroeder, Hans Konrad Schackert, Bence Sipos, Günter Klöppel, Holger Kalthoff, Hans-Detlev Saeger, Christian Pilarsky, Robert Grützmann

published 19 Aug 2010

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