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Genomic databases

Annotation of the Transcriptome from Taenia pisiformis and Its Comparative Analysis with Three Taeniidae Species

Deying Yang, Yan Fu, Xuhang Wu, Yue Xie, Huaming Nie, Lin Chen, Xiang Nong, Xiaobin Gu, Shuxian Wang, Xuerong Peng, Ning Yan, Runhui Zhang, Wanpeng Zheng, Guangyou Yang

published 13 Apr 2012

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Fast and Accurate Taxonomic Assignments of Metagenomic Sequences Using MetaBin

Vineet K. Sharma, Naveen Kumar, Tulika Prakash, Todd D. Taylor

published 04 Apr 2012

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A Genome-Wide Identification Analysis of Small Regulatory RNAs in Mycobacterium tuberculosis by RNA-Seq and Conservation Analysis

Danilo Pellin, Paolo Miotto, Alessandro Ambrosi, Daniela Maria Cirillo, Clelia Di Serio

published 28 Mar 2012

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Fast and Robust Characterization of Time-Heterogeneous Sequence Evolutionary Processes Using Substitution Mapping

Jonathan Romiguier, Emeric Figuet, Nicolas Galtier, Emmanuel J. P. Douzery, Bastien Boussau, Julien Y. Dutheil, Vincent Ranwez

published 27 Mar 2012

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microPIR: An Integrated Database of MicroRNA Target Sites within Human Promoter Sequences

Jittima Piriyapongsa, Chaiwat Bootchai, Chumpol Ngamphiw, Sissades Tongsima

published 16 Mar 2012

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Specific versus Non-Specific Immune Responses in an Invertebrate Species Evidenced by a Comparative de novo Sequencing Study

Emeline Deleury, Géraldine Dubreuil, Namasivayam Elangovan, Eric Wajnberg, Jean-Marc Reichhart, Benjamin Gourbal, David Duval, Olga Lucia Baron, Jérôme Gouzy, Christine Coustau

published 12 Mar 2012

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QServer: A Biclustering Server for Prediction and Assessment of Co-Expressed Gene Clusters

Fengfeng Zhou, Qin Ma, Guojun Li, Ying Xu

published 05 Mar 2012

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Reducing False-Positive Prediction of Minimotifs with a Genetic Interaction Filter

Jerlin C. Merlin, Sanguthevar Rajasekaran, Tian Mi, Martin R. Schiller

published 05 Mar 2012

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PrionHome: A Database of Prions and Other Sequences Relevant to Prion Phenomena

Djamel Harbi, Marimuthu Parthiban, Deena M. A. Gendoo, Sepehr Ehsani, Manish Kumar, Gerold Schmitt-Ulms, Ramanathan Sowdhamini, Paul M. Harrison

published 20 Feb 2012

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CAPRG: Sequence Assembling Pipeline for Next Generation Sequencing of Non-Model Organisms

Arun Rawat, Mohamed O. Elasri, Kurt A. Gust, Glover George, Don Pham, Leona D. Scanlan, Chris Vulpe, Edward J. Perkins

published 03 Feb 2012

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Minimal Absent Words in Four Human Genome Assemblies

Sara P. Garcia, Armando J. Pinho

published 29 Dec 2011

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Analysis of Transcriptome Differences between Resistant and Susceptible Strains of the Citrus Red Mite Panonychus citri (Acari: Tetranychidae)

Bin Liu, Gaofei Jiang, Yunfei Zhang, Junli Li, Xiaojiao Li, Jiansu Yue, Fei Chen, Haoqiang Liu, Hongjun Li, Shiping Zhu, Jinjun Wang, Chun Ran

published 05 Dec 2011

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MetaBinG: Using GPUs to Accelerate Metagenomic Sequence Classification

Peng Jia, Liming Xuan, Lei Liu, Chaochun Wei

published 23 Nov 2011

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