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Genomic databases

The First Illumina-Based De Novo Transcriptome Sequencing and Analysis of Safflower Flowers

Huang Lulin, Yang Xiao, Sun Pei, Tong Wen, Hu Shangqin

published 19 Jun 2012

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Improving Disease Gene Prioritization by Comparing the Semantic Similarity of Phenotypes in Mice with Those of Human Diseases

Anika Oellrich, Robert Hoehndorf, Georgios V. Gkoutos, Dietrich Rebholz-Schuhmann

published 14 Jun 2012

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Optimizing Read Mapping to Reference Genomes to Determine Composition and Species Prevalence in Microbial Communities

John Martin, Sean Sykes, Sarah Young, Karthik Kota, Ravi Sanka, Nihar Sheth, Joshua Orvis, Erica Sodergren, Zhengyuan Wang, George M. Weinstock, Makedonka Mitreva

published 13 Jun 2012

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Comparative Analysis of the 5S rRNA and Its Associated Proteins Reveals Unique Primitive Rather Than Parasitic Features in Giardia lamblia

Jin-Mei Feng, Jun Sun, De-Dong Xin, Jian-Fan Wen

published 07 Jun 2012

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arrayMap: A Reference Resource for Genomic Copy Number Imbalances in Human Malignancies

Haoyang Cai, Nitin Kumar, Michael Baudis

published 18 May 2012

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Experimental Incubations Elicit Profound Changes in Community Transcription in OMZ Bacterioplankton

Frank J. Stewart, Tage Dalsgaard, Curtis R. Young, Bo Thamdrup, Niels Peter Revsbech, Osvaldo Ulloa, Don E. Canfield, Edward F. DeLong

published 16 May 2012

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MycoRRdb: A Database of Computationally Identified Regulatory Regions within Intergenic Sequences in Mycobacterial Genomes

Mohit Midha, Nirmal K. Prasad, Vaibhav Vindal

published 26 Apr 2012

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Capturing Single Cell Genomes of Active Polysaccharide Degraders: An Unexpected Contribution of Verrucomicrobia

Manuel Martinez-Garcia, David M. Brazel, Brandon K. Swan, Carol Arnosti, Patrick S. G. Chain, Krista G. Reitenga, Gary Xie, Nicole J. Poulton, Monica Lluesma Gomez, Dashiell E. D. Masland, Brian Thompson, Wendy K. Bellows, Kai Ziervogel, Chien-Chi Lo, Sanaa Ahmed, Cheryl D. Gleasner, Chris J. Detter, Ramunas Stepanauskas

published 20 Apr 2012

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Annotation of the Transcriptome from Taenia pisiformis and Its Comparative Analysis with Three Taeniidae Species

Deying Yang, Yan Fu, Xuhang Wu, Yue Xie, Huaming Nie, Lin Chen, Xiang Nong, Xiaobin Gu, Shuxian Wang, Xuerong Peng, Ning Yan, Runhui Zhang, Wanpeng Zheng, Guangyou Yang

published 13 Apr 2012

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Fast and Accurate Taxonomic Assignments of Metagenomic Sequences Using MetaBin

Vineet K. Sharma, Naveen Kumar, Tulika Prakash, Todd D. Taylor

published 04 Apr 2012

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A Genome-Wide Identification Analysis of Small Regulatory RNAs in Mycobacterium tuberculosis by RNA-Seq and Conservation Analysis

Danilo Pellin, Paolo Miotto, Alessandro Ambrosi, Daniela Maria Cirillo, Clelia Di Serio

published 28 Mar 2012

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Fast and Robust Characterization of Time-Heterogeneous Sequence Evolutionary Processes Using Substitution Mapping

Jonathan Romiguier, Emeric Figuet, Nicolas Galtier, Emmanuel J. P. Douzery, Bastien Boussau, Julien Y. Dutheil, Vincent Ranwez

published 27 Mar 2012

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microPIR: An Integrated Database of MicroRNA Target Sites within Human Promoter Sequences

Jittima Piriyapongsa, Chaiwat Bootchai, Chumpol Ngamphiw, Sissades Tongsima

published 16 Mar 2012

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