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Genomic databases

Comparative evaluation of bioinformatic tools for virus-host prediction and their application to a highly diverse community in the Cuatro Ciénegas Basin, Mexico

Alejandro Miguel Cisneros-Martínez, Ulises E. Rodriguez-Cruz, Luis D. Alcaraz, Arturo Becerra, Luis E. Eguiarte, Valeria Souza

published 01 Feb 2024

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SRplot: A free online platform for data visualization and graphing

Doudou Tang, Mingjie Chen, Xinhua Huang, Guicheng Zhang, Lin Zeng, Guangsen Zhang, Shangjie Wu, Yewei Wang

published 09 Nov 2023

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De novo assembly of Iron-Heart Cunninghamia lanceolata transcriptome and EST-SSR marker development for genetic diversity analysis

Sen Liu, Gongxiu He, Gongliang Xie, Yamei Gong, Ninghua Zhu, Can Xiao

published 02 Nov 2023

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A web-based platform for the annotation and analysis of NAR-published databases

Marcel Friedrichs, Cassandra Königs

published 23 Oct 2023

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Importance of mobile genetic elements for dissemination of antimicrobial resistance in metagenomic sewage samples across the world

Markus H. K. Johansson, Frank M. Aarestrup, Thomas N. Petersen

published 19 Oct 2023

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Are the predicted known bacterial strains in a sample really present? A case study

Minerva Ventolero, Saidi Wang, Haiyan Hu, Xiaoman Li

published 13 Oct 2023

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Genome taxonomy of the genus Neptuniibacter and proposal of Neptuniibacter victor sp. nov. isolated from sea cucumber larvae

Rika Kudo, Ryota Yamano, Juanwen Yu, Shotaro Koike, Alfabetian Harjuno Condro Haditomo, Mayanne A. M. de Freitas, Jiro Tsuchiya, Sayaka Mino, Fabiano Thompson, Jesús L. Romalde, Hisae Kasai, Yuichi Sakai, Tomoo Sawabe

published 15 Aug 2023

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Transposable element insertions in 1000 Swedish individuals

Kristine Bilgrav Saether, Daniel Nilsson, Håkan Thonberg, Emma Tham, Adam Ameur, Jesper Eisfeldt, Anna Lindstrand

published 28 Jul 2023

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Reliability of species detection in 16S microbiome analysis: Comparison of five widely used pipelines and recommendations for a more standardized approach

Andreas Hiergeist, Jean Ruelle, Stefan Emler, André Gessner

published 16 Feb 2023

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GAMBIT (Genomic Approximation Method for Bacterial Identification and Tracking): A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification

Jared Lumpe, Lynette Gumbleton, Andrew Gorzalski, Kevin Libuit, Vici Varghese, Tyler Lloyd, Farid Tadros, Tyler Arsimendi, Eileen Wagner, Craig Stephens, Joel Sevinsky, David Hess, Mark Pandori

published 16 Feb 2023

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The virtual microbiome: A computational framework to evaluate microbiome analyses

Belén Serrano-Antón, Francisco Rodríguez-Ventura, Pere Colomer-Vidal, Riccardo Aiese Cigliano, Clemente F. Arias, Federica Bertocchini

published 08 Feb 2023

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Annotations of novel antennae-expressed genes in male Glossina morsitans morsitans tsetse flies

Billiah K. Bwana, Paul O. Mireji, George F. Obiero, Consolata Gakii, Modesta O. Akoth, Julius N. Mugweru, Franklin N. Nyabuga, Benson M. Wachira, Rosemary Bateta, Margaret M. Ng’ang’a, Ahmed Hassanali

published 29 Aug 2022

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Measuring quality of DNA sequence data via degradation

Alan F. Karr, Jason Hauzel, Adam A. Porter, Marcel Schaefer

published 03 Aug 2022

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