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Genomic databases

Influence of Commonly Used Primer Systems on Automated Ribosomal Intergenic Spacer Analysis of Bacterial Communities in Environmental Samples

Witoon Purahong, Barbara Stempfhuber, [ ... ], Dirk Krüger

Scripps Genome ADVISER: Annotation and Distributed Variant Interpretation SERver

Phillip H. Pham, William J. Shipman, [ ... ], Ali Torkamani

STBase: One Million Species Trees for Comparative Biology

Michelle M. McMahon, Akshay Deepak, [ ... ], Michael J. Sanderson

Phylogenetic Profiling: How Much Input Data Is Enough?

Nives Škunca, Christophe Dessimoz

Metagenomic Profiling of Known and Unknown Microbes with MicrobeGPS

Martin S. Lindner, Bernhard Y. Renard

PRIMED: PRIMEr Database for Deleting and Tagging All Fission and Budding Yeast Genes Developed Using the Open-Source Genome Retrieval Script (GRS)

Michael T. Cummings, Richard I. Joh, Mo Motamedi

Strategies to Avoid Wrongly Labelled Genomes Using as Example the Detected Wrong Taxonomic Affiliation for Aeromonas Genomes in the GenBank Database

Roxana Beaz-Hidalgo, Mohammad J. Hossain, Mark R. Liles, Maria-Jose Figueras

Binpairs: Utilization of Illumina Paired-End Information for Improving Efficiency of Taxonomic Binning of Metagenomic Sequences

Anirban Dutta, Disha Tandon, [ ... ], Sharmila S. Mande

Bacterial Bile Metabolising Gene Abundance in Crohn's, Ulcerative Colitis and Type 2 Diabetes Metagenomes

Alain Labbé, Jorge G. Ganopolsky, [ ... ], Mitchell L. Jones

Genome-Wide Identification and Expression Profile Analysis of Citrus Sucrose Synthase Genes: Investigation of Possible Roles in the Regulation of Sugar Accumulation

Mohammad Zahidul Islam, Xiao-Mei Hu, [ ... ], Shu-Ang Peng

MetaGeniE: Characterizing Human Clinical Samples Using Deep Metagenomic Sequencing

Arun Rawat, David M. Engelthaler, [ ... ], Jeffrey T. Foster

Diverse and Widespread Contamination Evident in the Unmapped Depths of High Throughput Sequencing Data

Richard W. Lusk

Transcriptome Sequencing and Profiling of Expressed Genes in Phloem and Xylem of Ramie (Boehmeria nivea L. Gaud)

Jianrong Chen, Fang Liu, [ ... ], Qingquan Guo

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