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Genomic databases

Big Data in metagenomics: Apache Spark vs MPI

José M. Abuín, Nuno Lopes, [ ... ], Bertil Schmidt

Germline Variants of Prostate Cancer in Japanese Families

Takahide Hayano, Hiroshi Matsui, [ ... ], Ituro Inoue

Randomizing Genome-Scale Metabolic Networks

Areejit Samal, Olivier C. Martin

Cataloging Coding Sequence Variations in Human Genome Databases

Hong-Hee Won, Hee-Jin Kim, Kyung-A Lee, Jong-Won Kim

MiasDB: A Database of Molecular Interactions Associated with Alternative Splicing of Human Pre-mRNAs

Yongqiang Xing, Xiujuan Zhao, [ ... ], Lu Cai

dEMBF: A Comprehensive Database of Enzymes of Microalgal Biofuel Feedstock

Namrata Misra, Prasanna Kumar Panda, Bikram Kumar Parida, Barada Kanta Mishra

GenomeGraphR: A user-friendly open-source web application for foodborne pathogen whole genome sequencing data integration, analysis, and visualization

Moez Sanaa, Régis Pouillot, [ ... ], Jane M. Van Doren

Consensus assessment of the contamination level of publicly available cyanobacterial genomes

Luc Cornet, Loïc Meunier, [ ... ], Denis Baurain

The genome, transcriptome, and proteome of the fish parasite Pomphorhynchus laevis (Acanthocephala)

Katharina Mauer, Sören Lukas Hellmann, [ ... ], Holger Herlyn

Assembling a Protein-Protein Interaction Map of the SSU Processome from Existing Datasets

Young H. Lim, J. Michael Charette, Susan J. Baserga

Whole genome sequence of pan drug-resistant clinical isolate of Acinetobacter baumannii ST1890

Thanwa Wongsuk, Siriphan Boonsilp, [ ... ], Worrapoj Oonanant

Fast and Robust Characterization of Time-Heterogeneous Sequence Evolutionary Processes Using Substitution Mapping

Jonathan Romiguier, Emeric Figuet, [ ... ], Vincent Ranwez

MetaBinG: Using GPUs to Accelerate Metagenomic Sequence Classification

Peng Jia, Liming Xuan, Lei Liu, Chaochun Wei

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